Locus 57

Sequence ID dm3.chr2L
Location 437,961 – 438,051
Length 90
Max. P 0.658078
window86

overview

Window 6

Location 437,961 – 438,051
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 94.57
Shannon entropy 0.08333
G+C content 0.63254
Mean single sequence MFE -32.17
Consensus MFE -30.10
Energy contribution -30.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.36
SVM RNA-class probability 0.658078
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 437961 90 - 23011544
CAAAUUGAUGCCGCUGGAGCCGCCCCAGACGAAGUUGGAGACGAAAGGCGGAAGAUGGCAAUGGCUAUGGCGAUGGCGAUGGCGCCCGCC
........(((((((....(((((..........(((....)))..))))).)).)))))........((((..((((....)))))))) ( -30.50, z-score =  -0.50, R)
>droSim1.chr2L 444481 84 - 22036055
CAAAUUGAUGCCGCUGGAGCCGCCCCAGACGGAGUUGGAGACGAAAGGCGGAAGAUGGCA------AUGGCGAUGGCGAUGGCGCCCGCC
........(((((((....(((((((....))..(((....)))..))))).)).)))))------..((((..((((....)))))))) ( -33.30, z-score =  -1.87, R)
>droSec1.super_14 421709 84 - 2068291
CAAAUUGAUGCCGCUGGAGCCGCCCCAGACGGAGUUGGAGACGAAAGGCGGAAGAUGGCA------AUGGCGAUGGCGAUGGCGCCCGCC
........(((((((....(((((((....))..(((....)))..))))).)).)))))------..((((..((((....)))))))) ( -33.30, z-score =  -1.87, R)
>droEre2.scaffold_4929 490395 90 - 26641161
CAAAUUGAUGCCGCUGGAGCCGCCCCAGACGAAGUUGGAGACGAAAGGCGGAAGAUGGCAAUGGCAAUGGCGAUGGCGAUGGCGCCCGCC
...((((.(((((((....(((((..........(((....)))..))))).)).)))))....))))((((..((((....)))))))) ( -31.60, z-score =  -0.85, R)
>consensus
CAAAUUGAUGCCGCUGGAGCCGCCCCAGACGAAGUUGGAGACGAAAGGCGGAAGAUGGCA______AUGGCGAUGGCGAUGGCGCCCGCC
........(((((((....(((((..........(((....)))..))))).)).)))))........((((..((((....)))))))) (-30.10 = -30.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:51 2011