| Sequence ID | dm3.chr3L |
|---|---|
| Location | 559,048 – 559,143 |
| Length | 95 |
| Max. P | 0.535041 |
| Location | 559,048 – 559,143 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.94 |
| Shannon entropy | 0.41567 |
| G+C content | 0.33472 |
| Mean single sequence MFE | -13.05 |
| Consensus MFE | -6.11 |
| Energy contribution | -5.55 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 559048 95 - 24543557 GGAAACAGUUAUAGCAUAUAUAUUUUUAUUUAUGUAUCUUUCUGGCCAAUUCACCAUUGCAAUUUUCUUU-UCGUUAAUUGCAUCUAACUACAUCU ((...(((....((.(((((((........)))))))))..))).))..........(((((((..(...-..)..)))))))............. ( -16.10, z-score = -2.91, R) >droEre2.scaffold_4784 557830 95 - 25762168 AGAAACAGCUAAAGUGUAUUCAGACAUAUUUGU-UGUCGUUGCAUCCAAUUUACCAUUGCAAUUUUCUUCUUUGUUAAUUGCCCCUAGCUACAUCU (((...(((((..(((((....((((.......-))))..))))).............((((((..(......)..))))))...)))))...))) ( -17.70, z-score = -2.21, R) >droSec1.super_2 579554 82 - 7591821 ------AGCUAUAGCGCAUUUAUUUUC-------UAUCUUUCUGGCCCAUCCACCAUUGCAAUUUUCUUC-UCGUUAAUUGCAUCAAACUACAUAU ------.((....))............-------........(((........))).(((((((..(...-..)..)))))))............. ( -8.80, z-score = -0.98, R) >droSim1.chr2R 8780612 82 - 19596830 ------AGCUGUAGCGCAUUUAUUUUC-------UAUCUUUCUGGCCCAUCCACCAUUGUAAUUUUCUUC-UCGUUAAUUGCAUCUAACUACAUAU ------...(((((.............-------........(((........))).(((((((..(...-..)..))))))).....)))))... ( -9.60, z-score = -1.31, R) >consensus ______AGCUAUAGCGCAUUUAUUUUC_______UAUCUUUCUGGCCAAUCCACCAUUGCAAUUUUCUUC_UCGUUAAUUGCAUCUAACUACAUAU .......((....))...........................................((((((..(......)..)))))).............. ( -6.11 = -5.55 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:22 2011