| Sequence ID | dm3.chr3L |
|---|---|
| Location | 551,580 – 551,694 |
| Length | 114 |
| Max. P | 0.634762 |
| Location | 551,580 – 551,694 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.07 |
| Shannon entropy | 0.46817 |
| G+C content | 0.52113 |
| Mean single sequence MFE | -34.81 |
| Consensus MFE | -16.24 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 551580 114 + 24543557 CGAUAGGGCGAGAUC-----CGCACAAUCGAUGGCAGAAAUGAAAUUGUUUUUU-CACAACUCAAAACUCGGGAAGGUCAAACUGGGGUUGGGCGGGCACUUAAAGGGUCCGCCACUCAG ((((.(.(((.....-----))).).)))).((((.....(((((......)))-))...(((.......)))...))))..(((((....(((((((.((....))))))))).))))) ( -34.30, z-score = -1.65, R) >droSim1.chr2R 8773168 113 + 19596830 CGACAGGGCGAGAUC-----CGCACAAUCAAUGGCAGAAACGAAAUCGUUUUU--CACAACUCAAAACUCGGGAAGGUCAAACUGGGGUUGGGCGGGCACUUAAAGGGUCCGCCACUCAG .(((....((((...-----.((.((.....))))(((((((....)))))))--............)))).....)))...(((((....(((((((.((....))))))))).))))) ( -35.30, z-score = -2.24, R) >droSec1.super_2 572153 113 + 7591821 CGAUAGGGCGAUAUC-----CGCACAAUCAAUGGCAGAAACGAAAUCGUUUUU--CACAACUCAAAACUCGGGAAGGUCAAACUGGGGUUGGGUGGGUACUUAAAGGGUCCGCCACUCAG .(((.(.(((.....-----))).).)))..(((((((((((....)))))))--.....(((.......)))...))))..(((((....((((((..(.....)..)))))).))))) ( -30.80, z-score = -1.35, R) >droYak2.chr3L 533126 119 + 24197627 CGAUACAGCGAGAUCAUCCGCACUCAAUCAAUGGGAGAAAUAAAAUUGUGUUUU-CACAACUCAAAACGCGGGAAGGUCAAACUGGGGUUGGGCGGGCACUUAAAGGGUCCGCCACUCAG ...........((((.(((((.((((.....))))..........(((((....-)))))........)))))..))))...(((((....(((((((.((....))))))))).))))) ( -37.70, z-score = -3.07, R) >droEre2.scaffold_4784 550352 115 + 25762168 CGAUAGAGCGAGAUC-----CGCGCCAUCGAUGGCAGAAAUACAAUUUUUUUUUUCACAACUCAAAACUCGGGAAGGUCAAAUUGGGGUUGGGCGGGCACUUAAAGGGUCCGCCACUCAG .....(((...((((-----(..((((....)))).......((((((..((((((...............))))))..))))))))))).(((((((.((....))))))))).))).. ( -33.26, z-score = -1.58, R) >dp4.chrXR_group3a 636832 100 - 1468910 ----GGAGAGAGAUC------GUCUUGGCGAUCGCCCUACUGGAAGUCGAACU--CUCGACGCAGCUCCGGAGAAGGUCAAA---GGGAGAGGGAGAUACCCCUCUGGCACCCCA----- ----((((...((((------((....))))))((((....))..(((((...--.)))))))..)))).............---(((((((((......)))))).....))).----- ( -37.50, z-score = -0.32, R) >consensus CGAUAGAGCGAGAUC_____CGCACAAUCAAUGGCAGAAAUGAAAUUGUUUUU__CACAACUCAAAACUCGGGAAGGUCAAACUGGGGUUGGGCGGGCACUUAAAGGGUCCGCCACUCAG ...........((((....................(((((((....))))))).......(((.......)))..))))...(((((....(((((((.((....))))))))).))))) (-16.24 = -16.87 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:20 2011