| Sequence ID | dm3.chr3L |
|---|---|
| Location | 548,553 – 548,651 |
| Length | 98 |
| Max. P | 0.779400 |
| Location | 548,553 – 548,651 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 64.48 |
| Shannon entropy | 0.65828 |
| G+C content | 0.43451 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -11.79 |
| Energy contribution | -11.08 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 1.73 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 548553 98 + 24543557 ACAAUAGACGCCAUGGCAACUUUUUUCUUCUUUAUUUUU--------------GGUUUGGUUGGUGAGAGUGCAAGGAAGCGAUAAUUCGCAUGGUGGUUUGUCGCCGUUUU ((((....((((((.(((.(((((.((..((..((....--------------.))..))..)).))))))))......((((....))))))))))..))))......... ( -22.30, z-score = 0.17, R) >droEre2.scaffold_4784 547340 92 + 25762168 ACAAUAGACGCCAUGGCAACUUUUUUCUUCUUUUUUUGG--------------------UGGGGAGACAGGGCAAGGAGGCGAUAAUUCGCAUGGUGGUUUGUCUCCGUUUU ........(((((.(....)................)))--------------------)).(((((((((.((.....((((....))))....)).)))))))))..... ( -27.73, z-score = -1.94, R) >droYak2.chr3L 530167 112 + 24197627 ACAAUAGACGCCAUGGCAACUUUUUUCUUCUUUUUUCCCCUCUUUUUUUGGUGGGGUGAAGGGAGGAGAGAGCAAGGAGGCGAUAAUUCGCAUGGUGGUUUGUCGCCGUUUU .....((((((....))..(((((((((((((((..((((.((......)).)))).)))))))))))))))......((((((((..(((...)))..)))))))))))). ( -43.50, z-score = -3.66, R) >droSec1.super_2 569207 94 + 7591821 ACAAUAGACGCCAUGGCAACUUUUUUUUUGUCGGUCGGG------------------AAAGAGAGAGGAGAGCAAGGAAGCGAUAAUUCGCAUGGUGGUUUGUCGCCGUUUU .....(((((((.((.(..((((((((((.((....)).------------------))))))))))..)..)).))..(((((((..(((...)))..)))))))))))). ( -26.00, z-score = -1.02, R) >droSim1.chr2R 8770232 94 + 19596830 ACAAUAGACGCCAUGGCAACUUUUUUUGUGGGUAGGGAG------------------AGAGAGAGAGGAGAGCAAGGAAGCGAUAAUUCGCAUGGUGGUUUGUCGCCGUUUU .........((....))..((((((((.(........).------------------))))))))...(((((......((((....))))..(((((....)))))))))) ( -20.70, z-score = 0.14, R) >droAna3.scaffold_13337 21132245 90 - 23293914 ACAAUAGACGCCAUGGCAACUUUUUUUUU-UCCAUUUCC------------------AACGGGGAAGAGCCGUUAGAAAGCGAUAAUUCACAUG---GUUUGUCACUGCUUC ......(((((((((..............-....((((.------------------(((((.......))))).))))..((....)).))))---))..)))........ ( -19.40, z-score = -0.81, R) >droMoj3.scaffold_6654 1938142 96 - 2564135 ACAAUAAACGUGAAACCAUGCGAAAUUGUGUUCAUGUUUU-------------AUUGUUGUUGUUGUUGUUGUCACUUGGCUUCAAUUGGAAUU---UGUUGUUGUUGCUUU ((((((((((((((..((........))..)))))).)))-------------))))).(((.(.((((..(((....)))..)))).).))).---............... ( -17.30, z-score = 0.24, R) >consensus ACAAUAGACGCCAUGGCAACUUUUUUUUUCUUUAUUUCG__________________AAAGGGAGGAGAGAGCAAGGAAGCGAUAAUUCGCAUGGUGGUUUGUCGCCGUUUU ((((....(((((((....(((((((((.................................))))))))).((......)).........)))))))..))))......... (-11.79 = -11.08 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:19 2011