| Sequence ID | dm3.chr3L |
|---|---|
| Location | 525,501 – 525,594 |
| Length | 93 |
| Max. P | 0.886312 |
| Location | 525,501 – 525,594 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 66.25 |
| Shannon entropy | 0.66834 |
| G+C content | 0.53634 |
| Mean single sequence MFE | -15.42 |
| Consensus MFE | -7.65 |
| Energy contribution | -9.47 |
| Covariance contribution | 1.82 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.886312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 525501 93 - 24543557 UGUGGCGCCUCAAUUGCUUUUAAUGGUCACUUGUGGCGCUCCCCCACUCAUAGACUCGUCCCCCAAAAUCCCCUGUACAACUGCUCUCGUCGA .(..(((((.(((.((((......)).)).))).)))))..)..........(((.................................))).. ( -15.81, z-score = 0.16, R) >droSim1.chr2R 8744345 93 - 19596830 CGUGGCGCCUCAAUUGCUUUUAAUGGUCACUUGUGGCGCUCCUCCACUCAUAGAGUCGUCCCCCAAAAUCCCCUGUACAACCGCCCUCGUCAA ((.((((((.(((.((((......)).)).))).)))((..(((........)))..)).......................)))..)).... ( -17.50, z-score = -0.57, R) >droSec1.super_2 546722 93 - 7591821 CGUGGCGCCUCAAUUGCUUUUAAUGGUCACUUGUGGCGCUCCUCCACUCAUAGAGUCGUCCCCCAAAAUCCCCUGUACAACCGCCCCCGUCAA .((((((((.(((.((((......)).)).))).)))))......((((...)))).........................)))......... ( -17.40, z-score = -0.48, R) >droYak2.chr3L 505755 82 - 24197627 UGCGGCGCCUCAAUUGCUUUUAAUGGUCACUUGUGGCGCUCCUCCACUCAUAG-----------AAAAACCCCUCUACAAUCGCCCUCCUCAA .((((((((.(((.((((......)).)).))).)))))...........(((-----------(........))))....)))......... ( -18.90, z-score = -2.76, R) >droEre2.scaffold_4784 523797 85 - 25762168 UGUGGCGCCUCAAUUGCUUUUAAUGGUCACUUGUGG--------CACUCAUAGAGUCUCCCCCCAAAAACCCCUCUACAAUCGCCUUCGUCAA ...((((((.(((.((((......)).)).))).))--------).....(((((.................))))).....)))........ ( -16.93, z-score = -1.45, R) >droVir3.scaffold_13049 21893399 73 + 25233164 UGUGGCGCUUCAAUUGUGUUUUAUAGUCU------GCGCCCUGCCGACCAAAG---CGCCCCCCCUUCCCCCUUCUCCACCU----------- ...(((((((....((((...))))(((.------((.....)).)))..)))---))))......................----------- ( -13.40, z-score = -1.78, R) >droGri2.scaffold_15110 20318930 72 + 24565398 UGUGGCGCUUCAAUUGUGUUUAACAGUCA------GUUCCCCA-UGCUUGCAG---CCUCCCCUCCCUCCCUCUCUUUAUAG----------- ...(((........(((.....)))((.(------((......-.))).)).)---))........................----------- ( -8.00, z-score = -0.11, R) >consensus UGUGGCGCCUCAAUUGCUUUUAAUGGUCACUUGUGGCGCUCCUCCACUCAUAGA_UCGUCCCCCAAAAUCCCCUCUACAACCGCCCUCGUCAA ...((((((.(((.((((......)).)).))).))))))..................................................... ( -7.65 = -9.47 + 1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:15 2011