| Sequence ID | dm3.chr3L |
|---|---|
| Location | 523,637 – 523,738 |
| Length | 101 |
| Max. P | 0.960149 |
| Location | 523,637 – 523,738 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.81 |
| Shannon entropy | 0.37490 |
| G+C content | 0.44208 |
| Mean single sequence MFE | -26.38 |
| Consensus MFE | -17.18 |
| Energy contribution | -17.46 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 523637 101 - 24543557 CUUUCCAAGCCCGUCGUCGCUCCAUUUUAUGGAACCGUUAGGAAAACAGAGAUGAUAAGUGCAUUCG-----CACUUGAAAUACACUGCACUCAUAAUAGCGGCGA .............((((((((((((...)))))...((((.((...(((.(((..(((((((....)-----))))))..)).).)))...)).)))).))))))) ( -26.30, z-score = -1.71, R) >droEre2.scaffold_4784 521754 96 - 25762168 ---CUUUUCCCGCCCGCCGUUCCAUUUUAUGGAACCGUUAGAAAAACAGAGAUGAUAAGUGCAUUCGCACUGCAUUUCAAGU-------ACUCAUAAUAGCGGCGA ---.......((((.((.(((((((...))))))).............((((((...(((((....))))).))))))....-------..........)))))). ( -29.70, z-score = -4.02, R) >droYak2.chr3L 503743 95 - 24197627 ----CUUUUCCGGCCGCCGCUCCAUAUUAUGGAACCGUUAGGAAAACAGAGAUGAUAAGUGCAUUCGCACUGCACUUUAGAU-------ACUCAUAAUAGCGGCGA ----..........(((((((....(((((((..((....)).....((((.((...(((((....))))).))))))....-------..)))))))))))))). ( -28.60, z-score = -2.62, R) >droSec1.super_2 544870 93 - 7591821 -------------CUUUCGUUCCAUUUUAUGGAACAGUUAGGAAAACAGAGAUGAUAAGUGCAAUCGCACUGCACUUGAAAUACACUGCACUCAUAAUGGCGGCGA -------------.(((((((((((...))))))).(((.....))).))))...((((((((.......)))))))).....(.((((.(.......))))).). ( -23.00, z-score = -1.58, R) >droSim1.chr2R 8742492 106 - 19596830 CUUUCCAAUCCCGUAGUCGUUCCAUUUUAUGGAACCGUUAGGAAAACAGAGAUGAUAAGUGCAUUCGCACUGCACUUGAAAUACAUUGCACUCAUAAUAGCGGCGA ........((((((....(((((((...))))))).............(((......(((((....)))))(((..((.....)).))).)))......)))).)) ( -24.30, z-score = -1.05, R) >consensus ____CCAAUCCCGCCGUCGUUCCAUUUUAUGGAACCGUUAGGAAAACAGAGAUGAUAAGUGCAUUCGCACUGCACUUGAAAUACA_UGCACUCAUAAUAGCGGCGA ..............(((((((.....((((((....(((.....)))........((((((((.......)))))))).............)))))).))))))). (-17.18 = -17.46 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:14 2011