| Sequence ID | dm3.chr3L |
|---|---|
| Location | 521,943 – 522,032 |
| Length | 89 |
| Max. P | 0.941815 |
| Location | 521,943 – 522,032 |
|---|---|
| Length | 89 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 61.66 |
| Shannon entropy | 0.68510 |
| G+C content | 0.33382 |
| Mean single sequence MFE | -18.24 |
| Consensus MFE | -4.58 |
| Energy contribution | -7.42 |
| Covariance contribution | 2.84 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.941815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 521943 89 - 24543557 -----UAACAAAUGC--CACUGUUACACUUUGAAAAAGUGUGACCUUUCUGAAUAGAACUGUGUUCCCUAAUGAAUACGCGUUUUUAAUGAAAUGU -----..(((.....--....(((((((((.....))))))))).((((.....((((((((((((......))))))).)))))....))))))) ( -19.80, z-score = -3.83, R) >droSim1.chr2R 8740782 89 - 19596830 -----UAAAAAAUGC--CACGGUUACACUUUGAAAGAGUGUAACCUUUCUGAAUAGCAUUGUGUUCCCUAAUGAAUAUGCGUUUUUAAUGAAAUAA -----..((((((((--...((((((((((.....))))))))))...............((((((......)))))))))))))).......... ( -23.50, z-score = -4.69, R) >droSec1.super_2 543151 89 - 7591821 -----UAACAAACGC--CACUGUUACACUUUGAAAGAGUGUGACCUUUCUAAAUAGCAUUGUGUUCCCUUAUGAAUAUGCGUUUUCAAUGAAAUGU -----....((((((--....(((((((((.....)))))))))................((((((......))))))))))))............ ( -19.00, z-score = -2.44, R) >droYak2.chr3L 501379 96 - 24197627 UAACAUGAAGCAUGCAAAACCAUUUAACUUUGACCAACUUUGACCUUUCUGGAAAAGAUUGUGUUUCCAAACGGAGACGCCUUUUCAAAGCAAUGU ...((((...))))......((((...((((((....((((..((.....)).))))...((((((((....))))))))....)))))).)))). ( -19.90, z-score = -1.59, R) >droGri2.scaffold_15110 20322032 68 + 24565398 ----------------------UCCCACUUGG--CAGUUGUUUCCAUUUU-AUUACUAUUUUAUUUUUUGUU--UUUUGCUUUUUAGGGGAAAAC- ----------------------((((.((.((--(((.............-.....................--..)))))....))))))....- ( -9.02, z-score = -0.33, R) >consensus _____UAAAAAAUGC__CACUGUUACACUUUGAAAAAGUGUGACCUUUCUGAAUAGCAUUGUGUUCCCUAAUGAAUAUGCGUUUUCAAUGAAAUGU .........((((((......(((((((((.....)))))))))................((((((......))))))))))))............ ( -4.58 = -7.42 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:13 2011