| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,049,745 – 4,049,835 |
| Length | 90 |
| Max. P | 0.645552 |
| Location | 4,049,745 – 4,049,835 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.54 |
| Shannon entropy | 0.41629 |
| G+C content | 0.41279 |
| Mean single sequence MFE | -24.85 |
| Consensus MFE | -10.04 |
| Energy contribution | -10.27 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.645552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4049745 90 - 23011544 --------CUCACCCCACACAUUAA--GCUACAAGUUUAAACAGAAAGUUUCUUUCUGGGGU--------------UUUCGCAACUCUGUGACUCACUUGAAAGCGGAAAUGUC --------...(((((.....((((--((.....))))))..((((((...)))))))))))--------------((((((...((.(((...)))..))..))))))..... ( -22.00, z-score = -1.69, R) >droSim1.chr2L_random 174802 89 - 909653 --------CUCACACCACACAUUAA--GCUACAAGUUUAAACAGAAAGUUUCUUUCUGGGGU--------------UUUCGCAACUCUGUGACUCAC-UGAAAGCGGAAAUGUC --------......((.....((((--((.....)))))).(((((((...)))))))))((--------------((((((...((.(((...)))-.))..))))))))... ( -21.70, z-score = -1.86, R) >droSec1.super_5 2152141 89 - 5866729 --------CUCACACCACACAUUAA--GCUACAAGUUUAAACAGAAAGUUUCUUUCUGGGGU--------------UUUCGCAACUCUGUGACUCAC-UGAAAGCGGAAAUGUC --------......((.....((((--((.....)))))).(((((((...)))))))))((--------------((((((...((.(((...)))-.))..))))))))... ( -21.70, z-score = -1.86, R) >droYak2.chr2L 4069237 95 - 22324452 --CUCACACCCCCCCCAGACAUUAA--GCCAAAAGUUUAAACAGAAAGUUUCUUUCUGGGAU--------------UUUCGCAAUUCUGUGACUCAC-UGAAAGCGGAAAUGUC --...........((((((..((((--((.....))))))..(((.....))).))))))((--------------((((((..(((.(((...)))-.))).))))))))... ( -21.90, z-score = -1.60, R) >droEre2.scaffold_4936 4283 89 - 4818 --------CUCACACUACACAUUAA--GCCAAAAGUUUAAACAGAAAGUUUCUGUCUGGGAA--------------UUUCGCAAUUCAGUGACUCAC-UGAAAGCGGAAAUGUC --------((((.........((((--((.....))))))(((((.....))))).))))..--------------((((((..(((((((...)))-)))).))))))..... ( -20.90, z-score = -1.85, R) >droAna3.scaffold_12943 621713 113 + 5039921 CUCAUUACCUUGUGUGUGACUUGAAAUGCUGUUUUUUAAAGCAGAAAGUUUCUUUUCGGGGCUUACCCGGAGAAUAUUUCGCAAUUUUGUGAGUCAUACGGCA-CGGAAAUGAA .(((((.((.((((((((((..(((((.((((((....))))))...)))))((((((((.....)))))))).....(((((....)))))))))))).)))-.)).))))). ( -40.90, z-score = -4.96, R) >consensus ________CUCACACCACACAUUAA__GCUACAAGUUUAAACAGAAAGUUUCUUUCUGGGGU______________UUUCGCAACUCUGUGACUCAC_UGAAAGCGGAAAUGUC .........................................(((((((...)))))))..................((((((......(((...)))......))))))..... (-10.04 = -10.27 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:13 2011