| Sequence ID | dm3.chr3L |
|---|---|
| Location | 517,238 – 517,334 |
| Length | 96 |
| Max. P | 0.507444 |
| Location | 517,238 – 517,334 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 59.68 |
| Shannon entropy | 0.72513 |
| G+C content | 0.44898 |
| Mean single sequence MFE | -18.55 |
| Consensus MFE | -7.36 |
| Energy contribution | -7.92 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 517238 96 + 24543557 CCAUGACAAACUCUGCUUUUCUGCUACUGCAGCUCGAAAGUGGAAGCACACGACGAAAGCAGUCGAAUAAAAUCAAAAUCUAAGCACACAAUGGAA----------- ((((.......((..(((((((((....))))...)))))..))......((((.......)))).........................))))..----------- ( -21.10, z-score = -1.38, R) >droSim1.chr2R 8736097 73 + 19596830 CCAUGACAAGCUCUGC--------UACUGCAGCUCGAAAGUGGAAGCACACGACGAAAGCAGUCGAAUAAAAUCAAA-UCUA------------------------- ...((((..(((((((--------....)))).(((...(((......)))..))).))).))))............-....------------------------- ( -14.80, z-score = -0.59, R) >droSec1.super_2 538457 73 + 7591821 CCACGACAAGCUCUGC--------UACUGCAGCUCGAAAGUGGAAGCACACGACGAAAGCAGUCGAAUAAAAUCAAA-UCUA------------------------- ...((((..(((((((--------....)))).(((...(((......)))..))).))).))))............-....------------------------- ( -16.80, z-score = -1.38, R) >droYak2.chr3L 496394 95 + 24197627 CAAUGACAAACUCUGC--------UACUGCAGCUCGAAAGUGGAAACACACGACGAAAGCAGCCAAACACAGUCGAA-UAAAAUCGGAUCUAAGCUCGAAUUCA--- ....(((......(((--------....)))(((.....(((....)))..(.(....)))))........)))(((-(....((((........)))))))).--- ( -17.90, z-score = -0.70, R) >droEre2.scaffold_4784 515223 95 + 25762168 CAAUGACCAACUCUGC--------CACUGCAACUCGAAAGUGGCAACACACGUCGAAAGCAGCCGAGCACAGUCGAA-UAAAAUCAAAUCUGAGCCCACACUAA--- .......(.(((.(((--------(.((((...((((..(((....)))...))))..))))..).))).))).)..-..........................--- ( -19.70, z-score = -1.40, R) >droMoj3.scaffold_6654 1900193 97 - 2564135 CUAGCAUAUACCCUGCA-------AGCCAUA-UGUGAAGGUGGUUGCUCAUAUCGAUAUCAAA-GAGGUUUCUCUAA-UGGAUGCAGAGUUCUGCAAGACUACAGUA ((.(((...((.(((((-------..(((((-(((((..((....)))))))).........(-(((....)))).)-))).))))).))..))).))......... ( -21.00, z-score = 0.69, R) >consensus CCAUGACAAACUCUGC________UACUGCAGCUCGAAAGUGGAAGCACACGACGAAAGCAGUCGAAUAAAAUCAAA_UCUAA_CA_A__U__GC____________ ..........................((((...(((...(((......)))..)))..))))............................................. ( -7.36 = -7.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:13 2011