| Sequence ID | dm3.chr3L |
|---|---|
| Location | 516,178 – 516,271 |
| Length | 93 |
| Max. P | 0.678093 |
| Location | 516,178 – 516,271 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 76.10 |
| Shannon entropy | 0.39921 |
| G+C content | 0.35200 |
| Mean single sequence MFE | -21.99 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.72 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 516178 93 - 24543557 -------------AAUAAUAGUAUUUAGU-AUUAUGAAACCAUCUAAUGUAGAGCUUCUAUCGCAUCUGGCAUAUGUCAGAUAGUUUCAGGAGCCACAAGAAAAUUU -------------.((((((.(....).)-))))).......(((..(((.(.((((((...(((((((((....))))))).))...)))))))))))))...... ( -20.60, z-score = -2.18, R) >droSim1.chr2R 8735053 96 - 19596830 CUGCUAAAUGUUGAAUAAUA-----------UUAUGAAACCAUCUUAAAUAGAGCUUCUAUCGCAUCUGGCAUAUGUCAGAUAGUUUUAGGAGCCACAAGAAAAUUU ........(.(((.......-----------...........(((.....)))(((((((..(((((((((....))))))).))..)))))))..))).)...... ( -21.00, z-score = -1.72, R) >droSec1.super_2 537430 106 - 7591821 CUGCAAAAUGUUGAAUAAUAGUAUGCAGU-GUUAUGAAACCAUCUAAUGUUGAGCUUCUAUCGCAUCUGGCAUAUGUCAGAUAGUUUUAGGAGCCACAAGAAAAUUU (((((...((((....))))...))))).-............(((..(((.(.(((((((..(((((((((....))))))).))..))))))))))))))...... ( -28.00, z-score = -2.36, R) >droEre2.scaffold_4784 514211 104 - 25762168 ---CAAAGUCAUGGGUAAUAGUAUGUAGCAUUUUUCAGACCACCUCAUUUAGGGCUUUUAUCGCAGCUGGCAUGUGUCGGAUACUUUAAGGAGCCACAGGAAAAUUU ---....(((.((((.(((.((.....))))).)))))))..(((.......(((((((.......(((((....)))))........)))))))..)))....... ( -18.36, z-score = 1.23, R) >consensus ___CAAAAUGUUGAAUAAUAGUAUGUAGU__UUAUGAAACCAUCUAAUGUAGAGCUUCUAUCGCAUCUGGCAUAUGUCAGAUAGUUUUAGGAGCCACAAGAAAAUUU ...................................................(.(((((((..(((((((((....))))))).))..))))))))............ (-15.10 = -15.72 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:12 2011