| Sequence ID | dm3.chr3L |
|---|---|
| Location | 515,588 – 515,688 |
| Length | 100 |
| Max. P | 0.576408 |
| Location | 515,588 – 515,688 |
|---|---|
| Length | 100 |
| Sequences | 9 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 72.61 |
| Shannon entropy | 0.50432 |
| G+C content | 0.44090 |
| Mean single sequence MFE | -18.94 |
| Consensus MFE | -8.59 |
| Energy contribution | -8.45 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576408 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 515588 100 + 24543557 ----------GCCAAAAUGUGGCUCAUAAAGCAUCGAGCAUCGAGCAUC-------AACAACCGAAAUAUCGGCAACAACAAUUUAUUGGUCGCAUUAACCCCAACGAACUCU--CUCA ----------.....(((((((((.(((((((.(((.....)))))...-------.....((((....)))).........))))).)))))))))................--.... ( -21.70, z-score = -2.50, R) >droEre2.scaffold_4784 513668 91 + 25762168 ----------GGCAGAAUGUGGCUCAUAAAGCAUCGGGCAUCAAG--------------AGCCGAAAU--CGGCAACAACAAUUUAUUGGUCGCAUUAACCCCGGCGAACUCU--CUCG ----------((...(((((((((.(((((((.....))......--------------.((((....--))))........))))).)))))))))....))..(((.....--.))) ( -24.00, z-score = -1.09, R) >droYak2.chr3L 494684 105 + 24197627 ----------GGCAAAAUAUGGCUCAUAAAGCAUCCAGCAUCGAACAUCCAGCAUCAACAGCCGAAAU--CGGCAACAACAAUUUAUUGGUCGCAUUAACCCCAACGAACUCU--CUCG ----------((...(((.(((((.(((((((.....)).....................((((....--))))........))))).))))).)))....))..(((.....--.))) ( -17.00, z-score = -0.72, R) >droSec1.super_2 536875 100 + 7591821 ----------GCCAAAAUGUGGCUCAUAAAGCAUCGAGCAUCGAGCAGC-------AACAACCGAAAUAUCGGCAACAACAAUUUAUUGGUCGCAUUAACCCCAACGAACUCU--CUCA ----------.....(((((((((.(((((((.(((.....)))))...-------.....((((....)))).........))))).)))))))))................--.... ( -21.70, z-score = -2.03, R) >droSim1.chr2R 8734466 100 + 19596830 ----------GCCAAAAUGUGGCUCAUAAAGCAUCGAGCAUCGAGCAGC-------AACAACCGAAAUAUCGGCAACAACAAUUUAUUGGUCGCAUUAACCCCAACGAACUCU--CUCA ----------.....(((((((((.(((((((.(((.....)))))...-------.....((((....)))).........))))).)))))))))................--.... ( -21.70, z-score = -2.03, R) >droWil1.scaffold_180727 2450576 84 - 2741493 -------------------UGGCUCAUAAAACAUCAAACA----------------GGCAACACAAAUCGCAACAACAACAAUUUAUUGGUCGCAUUAACCUCAACGAACUCUAACUCA -------------------.((((.(((((..........----------------.((..........))...........))))).))))........................... ( -5.75, z-score = -0.06, R) >droVir3.scaffold_13049 3327973 96 + 25233164 -----------CAAAAAUAUGGCCCAUAAAGCAUCAGCGAGCCCGAAAU---------CAGCAACAACU-CGCCAAUAACAAUUUAUUGGCCGUAUUAACCUCGGCGAACUCU--CUCA -----------....(((((((((.(((((......(((((........---------.........))-))).........))))).)))))))))................--.... ( -19.99, z-score = -1.97, R) >droMoj3.scaffold_6654 1897440 96 - 2564135 -----------AAAAAAUAUGGCCCAUAAAGCAUCAGCGGGCCAGAAAU---------CAGCAACAACU-CGCCAAUAACAAUUUAUUGGCCAUAUUAACCCCAGCGAACUCU--CUCA -----------....(((((((((.(((((((....)).(((.((....---------.........))-.)))........))))).)))))))))................--.... ( -21.02, z-score = -2.56, R) >droGri2.scaffold_15110 4236708 105 + 24565398 CAAAAUAUUGCCAAAAAUAUGGCCCAUUAAGCAUCAGCGGGUU-GAAAU---------CAGCAACAACU-CGCCA-UAACGAUUUAUUGACCAUAUUAACCCCGACGAACUCU--CUCA .........((((......)))).......((....))(((((-((.((---------...(((.((.(-((...-...))).)).)))...)).)))))))...........--.... ( -17.60, z-score = -1.01, R) >consensus __________GCCAAAAUAUGGCUCAUAAAGCAUCAAGCAUCGAGCAAC_________CAGCCGAAAUA_CGGCAACAACAAUUUAUUGGUCGCAUUAACCCCAACGAACUCU__CUCA ...............(((((((((.(((((....................................................))))).)))))))))...................... ( -8.59 = -8.45 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:11 2011