| Sequence ID | dm3.chr3L |
|---|---|
| Location | 490,863 – 490,923 |
| Length | 60 |
| Max. P | 0.897423 |
| Location | 490,863 – 490,923 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 72.87 |
| Shannon entropy | 0.45345 |
| G+C content | 0.61460 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -13.74 |
| Energy contribution | -14.77 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897423 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 490863 60 + 24543557 --------GACUUCGCCGCAGAUAAAUUCGC-CGCCC-----CG--ACGCGUCGGGCAAGUUUGCGGCGACUUUGG --------....(((((((((((...((((.-(((..-----..--..))).))))...)))))))))))...... ( -24.80, z-score = -1.94, R) >droEre2.scaffold_4784 488711 60 + 25762168 --------GACUUCGCCGCAGAUACAUUCGC-CGCCC-----CG--GCGCGUCAGGCCAGUUUGCGGCGACUUUGG --------....(((((((((((......((-((...-----))--))((.....))..)))))))))))...... ( -24.70, z-score = -1.94, R) >droYak2.chr3L 469388 62 + 24197627 --------GACUUCGCCGCAGAUACAUUCGC-CGCCA-----CGCUGCGCGUCCGGCAAGUUUGCGGCGACUUCGG --------((..(((((((((((...((.((-((..(-----(((...)))).)))))))))))))))))..)).. ( -27.70, z-score = -2.60, R) >droSec1.super_2 512808 60 + 7591821 --------GACUUCGCCGCAGAUAAAUUCGC-CGCCC-----CG--ACGCGUCAAGCAAGUUUGCGGCGACUUUGG --------....(((((((((((....(((.-.....-----))--).((.....))..)))))))))))...... ( -21.10, z-score = -1.78, R) >droSim1.chr2R 8709687 60 + 19596830 --------GACUUCGCCGCAGAUAAAUUCGC-CGCCC-----CG--ACGCGUCAAGCAAGUUUGCGGCGACUUUGG --------....(((((((((((....(((.-.....-----))--).((.....))..)))))))))))...... ( -21.10, z-score = -1.78, R) >droGri2.scaffold_15110 4197320 76 + 24565398 GCGCGUUUAUCUGCGCGUCAGAUACACACACACGCAAGCGAACACAGCACAGCAGUUGGAGUUGUAGCAACUCACA ((((((......))))))............(.(....).)....((((......))))((((((...))))))... ( -18.60, z-score = 0.03, R) >consensus ________GACUUCGCCGCAGAUAAAUUCGC_CGCCC_____CG__ACGCGUCAGGCAAGUUUGCGGCGACUUUGG ............(((((((((((.........(((.............)))........)))))))))))...... (-13.74 = -14.77 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:04 2011