| Sequence ID | dm3.chr3L |
|---|---|
| Location | 487,220 – 487,327 |
| Length | 107 |
| Max. P | 0.598896 |
| Location | 487,220 – 487,327 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 90.32 |
| Shannon entropy | 0.16758 |
| G+C content | 0.38433 |
| Mean single sequence MFE | -29.37 |
| Consensus MFE | -20.26 |
| Energy contribution | -20.18 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 487220 107 - 24543557 AAAUGAAAAACAUUUCCAGUUUUUCUUCAAAAGGGAGAAAAGUAGAAGAAAAGAAGUUGAAAUG-CUUUUUUCCCUUGAAAUGAUGCGUCCGAGUGGCAAACGAAAGA--- ....(((((((.......))))))).(((.((((((((((((((..................))-))))))))))))....)))(((.........)))..(....).--- ( -24.87, z-score = -1.61, R) >droEre2.scaffold_4784 485072 106 - 25762168 AAAUGAAAAACAUUUCCAGUUUUUCUUCAAAAGGGAGAAAAGU-GAAGAAAAGAAGCUGAACUGCCUUUUUUCCCUUGAAAUGAUGCGUCCGAGUGGCCGGGGCAGC---- ....(((((((.......))))))).(((.((((((((((((.-(.((...((...))...)).)))))))))))))....)))(((.((((......)))))))..---- ( -27.90, z-score = -0.71, R) >droYak2.chr3L 465682 109 - 24197627 AAAUGAAAAACAUUUCCAGUUUUUCUUCAAAAGGGAGAAAAGC-GAAGAAAAGAAGCUGAAAUG-CUUUUUUCCCUUGAAAUGAUGCGGCCGAGUGGCCGGAGGAGAAGAA (((((.....)))))....(((((((((..(((((((((((((-(.((........))....))-)))))))))))).........(((((....)))))))))))))).. ( -36.20, z-score = -3.53, R) >droSec1.super_2 509167 107 - 7591821 AAAUGAAAAACAUUUCCAGUUUUUCUUCAAAAGGGAGAAAAGUAGAAGAAAAGAAGCUGAAAUG-CUUUUUUCCCUUGAAGUGAUGCGUCCGAGUGGCAAACGAAAGA--- ..........(((((...((.((.(((((..(((((((((((((..((........))....))-)))))))))))))))).)).))....))))).....(....).--- ( -27.70, z-score = -2.15, R) >droSim1.chr2R 8706017 107 - 19596830 AAAUGAAAAACAUUACCAGUUUUUCUUCAAAAGGGAGAAAAGUAGAAGAAACGAAGCUGAAAUG-CUUUUCUCCCUUGAAGUGAUGCGUCCGAGUGGCAAACGAAAGA--- ....(((((((.......))))))).(((.((((((((((((((..((........))....))-))))))))))))....)))(((.........)))..(....).--- ( -30.20, z-score = -3.14, R) >consensus AAAUGAAAAACAUUUCCAGUUUUUCUUCAAAAGGGAGAAAAGUAGAAGAAAAGAAGCUGAAAUG_CUUUUUUCCCUUGAAAUGAUGCGUCCGAGUGGCAAACGAAAGA___ ....(((((((.......))))))).(((.((((((((((((((..((........))....)).))))))))))))....)))...(.((....)))............. (-20.26 = -20.18 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:03 2011