| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,033,094 – 4,033,197 |
| Length | 103 |
| Max. P | 0.649947 |
| Location | 4,033,094 – 4,033,197 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 94.23 |
| Shannon entropy | 0.07947 |
| G+C content | 0.41611 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -22.70 |
| Energy contribution | -22.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.649947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4033094 103 + 23011544 UUUUCAAG-UCGCCUUUGCUGUUGUCACCUUGCGACGUCACUUUAGUUUUUUGUUGAUCUAGGUUGUUGCAGCUUGACGUCAGCGUAAAGUUUUUUAUCUGCUA ........-........((((.(((((..((((((((..((((..(((.......)))..))))))))))))..))))).)))).................... ( -23.70, z-score = -1.01, R) >droYak2.chr2L 4052330 104 + 22324452 UUUCCAAACUCGCCUUUGCUGUUGUCACCUUGCGACGUCAGUUUAGUUUUUUGUUGAUCUAGGUUGUUGCAGCUUGACGUCAGCGUAAAGUUUUUUAUCAGCUC .....(((((......(((((.(((((..((((((((....(((((.((......)).))))).))))))))..))))).)))))...)))))........... ( -23.80, z-score = -0.98, R) >droEre2.scaffold_4929 4094165 103 + 26641161 -UUUCCAACUCGCUUUUGCUGUUGUCACCUUGCGACGUCACUUUAGUUUUUUGUUGAUCUAGGUUGUUGCAGCUUGACGUCAGCGUAAAGUUUUUUAUCUGCUC -..........((((((((((.(((((..((((((((..((((..(((.......)))..))))))))))))..))))).))))).)))))............. ( -27.20, z-score = -2.44, R) >consensus UUUUCAAACUCGCCUUUGCUGUUGUCACCUUGCGACGUCACUUUAGUUUUUUGUUGAUCUAGGUUGUUGCAGCUUGACGUCAGCGUAAAGUUUUUUAUCUGCUC .................((((.(((((..((((((((....(((((.((......)).))))).))))))))..))))).)))).................... (-22.70 = -22.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:12 2011