| Sequence ID | dm3.chr3L |
|---|---|
| Location | 477,288 – 477,390 |
| Length | 102 |
| Max. P | 0.698397 |
| Location | 477,288 – 477,390 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 70.50 |
| Shannon entropy | 0.51296 |
| G+C content | 0.49358 |
| Mean single sequence MFE | -33.23 |
| Consensus MFE | -15.83 |
| Energy contribution | -15.55 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 477288 102 + 24543557 -AAUAUUUCAAGUGG-----AAAUGCGUGGUGAGAGGGCGGAGCCACAUGCCGCAGAAAAUCGCGCGUGAA---CUGUUCACUUUUUUCACUUGGCA--UAGUUCAUUUCCGG- -..(((.((((((((-----(((.(((((((......((((.........)))).....)))))))((((.---....))))..))))))))))).)--))............- ( -32.10, z-score = -1.56, R) >droPer1.super_23 690905 113 - 1662726 -UAUAUUUCAAGUGGGUGGCAGGGGCACGGGCUGUUGUUGCUGUUGCAUGCAACAGAUAUUUGCGCGUGAAAAACGAAGGAAAAACUUCACUUGGCAGCUGAUGGAUUUCCGGG -............((.((.((((..((((.((..(((((((........)))))))......)).))))......((((......)))).)))).)).))..(((....))).. ( -33.50, z-score = -1.00, R) >dp4.chrXR_group3a 527443 114 - 1468910 CUAUACUUCAAGUGGGUGGCAGGGGCACGGGCUGUUGUUGCUGUUGCAUGCAACAGAUAUUUGCGCGUGAAAAACGAAGGAAAAACUUCACUUGGCAGCUGAUGGAUUUCCGGG .............((.((.((((..((((.((..(((((((........)))))))......)).))))......((((......)))).)))).)).))..(((....))).. ( -33.50, z-score = -0.65, R) >droSec1.super_2 499331 102 + 7591821 -AAUAUUUCAAGUGG-----AAAUGCGUGGUGAGAGGGCGGAGCCACAUGCCGCAGAAAAUCGCGCGUGAA---CUGUUCACUUUUUUCACUUGGCA--UAGAUGAUUUCCGG- -..(((.((((((((-----(((.(((((((......((((.........)))).....)))))))((((.---....))))..))))))))))).)--))............- ( -32.10, z-score = -1.48, R) >droYak2.chr3L 454592 89 + 24197627 -AAAAUUUCAAGUGA-----AAAUGCGUGGUGAGAGGGCGGAGCCACAUGCCACAGAAAAUCGCGCGU----------------UUUUCACUUGGCA--CAGUGGAUUUCCGG- -......((((((((-----(((((((((((.....((((........)))).......)))))))).----------------)))))))))))..--...(((....))).- ( -30.70, z-score = -2.32, R) >droEre2.scaffold_4784 475126 102 + 25762168 -AAUAUUUCAAGUGG-----AAAUGCGUGGUGCGAGGGCGGAGCCUCAUGCCACGGAAAAUCGCGCGUGAA---CUGUGCAGUUUUUCCACUUGGCA--CAGUUGAUUUCCGG- -......((((((((-----(((.(((((((..((((......))))..)))))........(((((....---).)))).)).)))))))))))..--..............- ( -37.50, z-score = -1.98, R) >consensus _AAUAUUUCAAGUGG_____AAAUGCGUGGUGAGAGGGCGGAGCCACAUGCCACAGAAAAUCGCGCGUGAA___CUGUGCAAUUUUUUCACUUGGCA__UAGUGGAUUUCCGG_ .......((((((((.......(((((((((.....((((........)))).......)))))))))...................))))))))................... (-15.83 = -15.55 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:02 2011