| Sequence ID | dm3.chr3L |
|---|---|
| Location | 477,016 – 477,111 |
| Length | 95 |
| Max. P | 0.545034 |
| Location | 477,016 – 477,111 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.36 |
| Shannon entropy | 0.31172 |
| G+C content | 0.40949 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -19.71 |
| Energy contribution | -18.83 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 477016 95 - 24543557 -------------AAAUUAAAUUGCAG-ACUACAAUUCUUUGGAAUGGGAUUUGAAUGCAAGCCGUUGUGACCAGCCUACUUUGGUGAAAGAAAUGGCUGGCAGCUCAA -------------...(((((((.((.-.(((........)))..)).))))))).(((.(((((((.(.(((((......))))).)....))))))).)))...... ( -25.40, z-score = -1.26, R) >droSec1.super_2 499061 95 - 7591821 -------------AAAUUAAAUUGCAG-ACUACAAUUUUUUGGAAUGGGAUUUGAAUGCAAGCCGUUGCGACCAGCCAACUUUGGUGAAAGAAAUGGCUGGCAGCUCAA -------------...(((((((.((.-.(((........)))..)).))))))).(((.(((((((.......((((....))))......))))))).)))...... ( -24.62, z-score = -0.91, R) >droEre2.scaffold_4784 474843 108 - 25762168 AAAUUAAAUUACACACUCAGAUUGUAGUAACGAACAUCUUUGGAAUGGAAUUUGAGUGGAAGGC-UUGCGACCAGCCUACUUUGGCAAAAGAAAUUGCUGGCAGCCCAA .............((((((((((.((....((((....))))...)).))))))))))...((.-..((..(((((...((((....)))).....)))))..)))).. ( -28.10, z-score = -1.62, R) >consensus _____________AAAUUAAAUUGCAG_ACUACAAUUCUUUGGAAUGGGAUUUGAAUGCAAGCCGUUGCGACCAGCCUACUUUGGUGAAAGAAAUGGCUGGCAGCUCAA ................(((((((.((...(((........)))..)).)))))))............((..((((((..((((....))))....))))))..)).... (-19.71 = -18.83 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:53:02 2011