| Sequence ID | dm3.chr3L |
|---|---|
| Location | 449,550 – 449,641 |
| Length | 91 |
| Max. P | 0.778808 |
| Location | 449,550 – 449,641 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 72.22 |
| Shannon entropy | 0.48929 |
| G+C content | 0.58044 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -15.60 |
| Energy contribution | -17.48 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 449550 91 - 24543557 GCGACCCAUCGAUCGUUGGCCUGCCAAAUCGA----UCGAUGUCGGUGGUCCAAUUGCGAUCCCCUGCCCCCGUUUUGAUUUAGCGGCUUGCGUG ((((..(((((((((((((....))))..)))----))))))..((.(((((....).)))).)).....(((((.......))))).))))... ( -29.60, z-score = -1.57, R) >droEre2.scaffold_4784 447564 78 - 25762168 --------GCGAUC-----CCUGCCAAAUCGA----UCGAUGUCGGUGGUCCAAUUGCGAUCCCCUCCCGCCGAUUUGAUUUGGCGGCUUGCGUG --------((((..-----.((((((((((((----.....((((((((..................)))))))))))))))))))).))))... ( -30.27, z-score = -2.87, R) >droSec1.super_2 471694 91 - 7591821 GCGACCCAUCGAUCGUUGGCCCGCCAAAUCGA----UCGAUGUCGGUGGUCCAAUUGCGAUCCCCUGCCCCCGUUUUGAUUUAGCGGCUUGCGUG ((((..(((((((((((((....))))..)))----))))))..((.(((((....).)))).)).....(((((.......))))).))))... ( -29.60, z-score = -1.40, R) >droSim1.chr2R 8668090 91 - 19596830 GCGACCCAUCGAUCGUUGGCCUGCCAAAUCGA----UCGAUGUCGGUGGUCCAAUUGCGAUCCCCUGCCCCCGUUUUGAUUUAGCGGCUUGCGUG ((((..(((((((((((((....))))..)))----))))))..((.(((((....).)))).)).....(((((.......))))).))))... ( -29.60, z-score = -1.57, R) >dp4.chrXR_group3a 489705 83 + 1468910 -CGCUCCAUCGAUCAUUGGCCUAUCGAAUGGACUCUUCAAUGCUGGUGGUCC-GCUAUAGCCCGGUGUGCGUGUGUGUGUGUGUG---------- -(((.((((((..((((((.((((.(...(((((..(((....))).)))))-.).)))).))))))..)).))).).)))....---------- ( -22.80, z-score = 0.26, R) >consensus GCGACCCAUCGAUCGUUGGCCUGCCAAAUCGA____UCGAUGUCGGUGGUCCAAUUGCGAUCCCCUGCCCCCGUUUUGAUUUAGCGGCUUGCGUG ..........(((((((((.(((((..(((((....)))))...))))).)))...))))))........(((((.......)))))........ (-15.60 = -17.48 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:57 2011