| Sequence ID | dm3.chr3L |
|---|---|
| Location | 439,377 – 439,468 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 439,377 – 439,468 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 73.29 |
| Shannon entropy | 0.48828 |
| G+C content | 0.42286 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -9.94 |
| Energy contribution | -11.51 |
| Covariance contribution | 1.58 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 439377 91 - 24543557 -ACUAAUUUGAUGGUCCAGCUCAAGUAGCUUCUAUAUGUGGUUAGUUAAGUGGUUCAAUGCGUUUUCCUAGAGGGCUUUGAACCGCAGUAAC -(((((((..((((...((((.....)))).))))....)))))))...(((((((((.((.(((.....))).)).)))))))))...... ( -26.70, z-score = -2.22, R) >droSim1.chr2R 8658010 91 - 19596830 -ACUAAUUGGAUGGUCCAGCUCAAGUAGCUUCUAUAUGUGGUUGGUUAAGUGGUUCAAUGCGUUUUCCUAGAGGGCUUUGAACCGCAGUAAC -((((((((.(((....((((.....))))....))).))))))))...(((((((((.((.(((.....))).)).)))))))))...... ( -27.10, z-score = -1.81, R) >droSec1.super_2 461793 91 - 7591821 -ACUAAUUGGAUGGUCCAGCUCAAGUAGCUUCUAUAUGUGGUUGGUUAAGUGGUUCAAUGCGUUUUCCUAGAGGGCUUUGAACCGCAGUAAC -((((((((.(((....((((.....))))....))).))))))))...(((((((((.((.(((.....))).)).)))))))))...... ( -27.10, z-score = -1.81, R) >droYak2.chr3L 415599 91 - 24197627 -CCAAAUUGGAUGGACCAACUCCAGUAGCUUCUAUGUGUGGUUGGUUAAGUGGUUCAAUGCGUUUUCCCAGAGGGCAUUGAACCGCAGUAAC -((.....))...(((((((..((((((...)))).))..)))))))..((((((((((((.(((.....))).))))))))))))...... ( -34.90, z-score = -3.82, R) >droEre2.scaffold_4784 435551 90 - 25762168 -CCAAAUUGGAUGGACCAACUCAAGUAGCUUCUAUACGUGGUUAGCUAAGUGGUUCAAUGCG-UUUGCCAGAGGGCAUUGAACCGCAGUAAC -.....((((...(((((......(((.......))).)))))..))))((((((((((((.-(((....))).))))))))))))...... ( -30.50, z-score = -2.90, R) >dp4.chrXR_group3a 478946 87 + 1468910 ACGAAAUGGAAUCGAAUCGACUUAUUAGUUUUGCUAUAC-----UCUAAAUAUUUCAAUGCGAAUCUCUUAAGGGCAAUGACCCUCACACAC .......(((.(((.((.((..(((((((........))-----)...))))..)).)).))).)))....((((......))))....... ( -10.20, z-score = 0.43, R) >droPer1.super_23 642838 87 + 1662726 ACGAAAUGGAAUCGAAUCGAUUUAUUAGUUUUGCUAUAC-----UCUAAAUAUUUCAAUGCGAAUCUCUUAAGGGCAAUGACCCUCACACAC ..((((((((((((...))))))..(((.....)))...-----......))))))...............((((......))))....... ( -11.90, z-score = -0.13, R) >consensus _CCAAAUUGGAUGGACCAGCUCAAGUAGCUUCUAUAUGUGGUUGGUUAAGUGGUUCAAUGCGUUUUCCUAGAGGGCAUUGAACCGCAGUAAC ......((((.....))))......(((((.............))))).(((((((((.((.............)).)))))))))...... ( -9.94 = -11.51 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:54 2011