| Sequence ID | dm3.chr3L |
|---|---|
| Location | 438,043 – 438,100 |
| Length | 57 |
| Max. P | 0.661120 |
| Location | 438,043 – 438,100 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 92.86 |
| Shannon entropy | 0.09666 |
| G+C content | 0.35374 |
| Mean single sequence MFE | -9.77 |
| Consensus MFE | -8.66 |
| Energy contribution | -8.66 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661120 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 438043 57 - 24543557 UUAGGGUAUCGCAUGGGCAAAAAAAAAAAAAACAUCCUAAAAGUGCGUGUGAUUAAG .......((((((((.((........................)).)))))))).... ( -9.66, z-score = -1.67, R) >droSim1.chr2R 8656676 54 - 19596830 UUUGGAUAUCGCAUGGGC---AAAAAAAAAAACAUCCUAAAAGUGCGUGUGAUUAAG .......((((((((.((---.....................)).)))))))).... ( -9.80, z-score = -1.54, R) >droSec1.super_2 460488 53 - 7591821 UUUGGAUAUCGCAUGGGC----AAAAAAAAAACAUCCUAAAAGUGCGUGUGAUUAAG .......((((((((.((----....................)).)))))))).... ( -9.85, z-score = -1.51, R) >consensus UUUGGAUAUCGCAUGGGC___AAAAAAAAAAACAUCCUAAAAGUGCGUGUGAUUAAG .......((((((((.((........................)).)))))))).... ( -8.66 = -8.66 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:53 2011