| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,028,271 – 4,028,355 |
| Length | 84 |
| Max. P | 0.846746 |
| Location | 4,028,271 – 4,028,355 |
|---|---|
| Length | 84 |
| Sequences | 8 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 72.94 |
| Shannon entropy | 0.58645 |
| G+C content | 0.47397 |
| Mean single sequence MFE | -17.39 |
| Consensus MFE | -6.67 |
| Energy contribution | -8.31 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4028271 84 + 23011544 GGCAUAUGGUUUCGAACCCCGACCGCAGGCUGAACCAAUUUUCAUAGAGAUUGCAAUUUAGCCCC-AAACCUUAACCUCAAUGCC (((((..(((((((.....))).....(((((((.(((((((....)))))))...)))))))..-.......))))...))))) ( -21.60, z-score = -3.14, R) >droSim1.chr2L 3989354 85 + 22036055 GGCAUAUGGUUUCGAACCCCGACCGCAGGCUGAACCAAUUUUCAUAGAGAUUGCAAUUUAGCCCCCAAACCUUAACCUCAAUGCC (((((..(((((((.....))).....(((((((.(((((((....)))))))...)))))))..........))))...))))) ( -21.60, z-score = -3.12, R) >droSec1.super_5 2131281 85 + 5866729 GGCAUAUGGUUUCGACCCCCGACCGCAGGCUGAACCAAUUUUCAUAGAGAUUGCAAUUUAGCCCCCAAACCUUAACCUCAAUGCC (((((..(((((((.....))).....(((((((.(((((((....)))))))...)))))))..........))))...))))) ( -21.60, z-score = -3.16, R) >droYak2.chr2L 4047235 85 + 22324452 GGCAUAUGGUUACGACCCCCGACCGCAGGCUGAACCAAUUUUCAUAGAGAUUGCAAUUUAGCCCCCAACCUUAACCCUCAACGCC (((....((((.........))))...(((((((.(((((((....)))))))...)))))))...................))) ( -18.00, z-score = -2.14, R) >droEre2.scaffold_4929 4089256 84 + 26641161 GGCAUAUGGUUUCGACCCCCGACCGCAGGCUGCACCAAUUUUCAUAGAGAUUGCAAUUUAGCCCCCAACCUUAACC-UCGACGCC (((....(((((((.....))).....(((((...(((((((....))))))).....))))).........))))-.....))) ( -15.70, z-score = -0.58, R) >droAna3.scaffold_12943 596852 85 - 5039921 GGCAUAUGGUUCCGAUUUCCAACCGCAGGCUGAACCAAUUUUCAUAGAGAUUGCAAUUUGGCCAACAACCCUUACCCCCUAUUAC .((...(((.........)))...)).(((..((.(((((((....)))))))...))..)))...................... ( -14.40, z-score = -0.15, R) >dp4.Unknown_singleton_4023 556 64 + 4242 --UGAAUAACUUUU-CUUGCGACC-----CUUGACCAAUAUUCAUAGAGAUUGCAAUUUAGACCUUAACCUC------------- --.(((......))-)((((((.(-----(((((.......))).)).).))))))................------------- ( -5.90, z-score = -1.04, R) >droGri2.scaffold_15252 12590012 77 + 17193109 -------GGUUAAAAGUGGCAACCGCAGGCUGUUCCAAUUUUCAUAGAGCCAGCAAUUUCGAAUUGCAUCCUUGCCGCACAAUC- -------........(((((((.....((((.(............).)))).(((((.....)))))....)))))))......- ( -20.30, z-score = -1.72, R) >consensus GGCAUAUGGUUUCGACCCCCGACCGCAGGCUGAACCAAUUUUCAUAGAGAUUGCAAUUUAGCCCCCAACCCUUACCCUCAAUGCC .......((((.........))))...(((((((.(((((((....)))))))...)))))))...................... ( -6.67 = -8.31 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:11 2011