| Sequence ID | dm3.chr3L |
|---|---|
| Location | 412,712 – 412,793 |
| Length | 81 |
| Max. P | 0.974914 |
| Location | 412,712 – 412,793 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 91.00 |
| Shannon entropy | 0.15500 |
| G+C content | 0.33095 |
| Mean single sequence MFE | -17.48 |
| Consensus MFE | -13.94 |
| Energy contribution | -14.94 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.974914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 412712 81 + 24543557 UAAAAUGCUUAUUGAGAUAGACAUUUCCGAAGCAUUUUGUAUAAAUGUCCUUACGUAUAAGGACCA---GUCUUUACCUUUGUU ((((((((((...(((((....)))))..)))))))))).......(((((((....)))))))..---............... ( -19.10, z-score = -3.36, R) >droEre2.scaffold_4784 408228 81 + 25762168 UAAAAUGCUUACUGAGAUAGACAUUUCCGCAGCAUUUUGUGUGAAUGUCCUUACCUAUAAAGAGCC---GUCUUUACCUUUGUU ..........((.(((...((((((..(((((....)))))..))))))........((((((...---.)))))).))).)). ( -15.40, z-score = -1.82, R) >droYak2.chr3L 388403 84 + 24197627 UAAAAAGCUUACUGAGAUAGACAUUUCCCAAGCAUUUUGUAUAAAUGUCCUUACGUAUAAAGACCAAAGGUAAAGACCUUUGUU .........(((((((...(((((((..((((...))))...))))))))))).))).......(((((((....))))))).. ( -14.70, z-score = -1.87, R) >droSec1.super_2 435151 81 + 7591821 UAAAAUGCUUAUUGAGAUAGACAUUUCCGAAGCAUUUUGUAUAAAUGUCCUUACGUAUAAGGACCA---GUCUUUACCUUUGUU ((((((((((...(((((....)))))..)))))))))).......(((((((....)))))))..---............... ( -19.10, z-score = -3.36, R) >droSim1.chr2R 8631909 81 + 19596830 UAAAAUGCUUAUUGAGAUAGACAUUUCCGAAGCAUUUUGUAUAAAUGUCCUUACCUAUAAGGACCA---GUCUUUACCUUUGUU ((((((((((...(((((....)))))..)))))))))).......(((((((....)))))))..---............... ( -19.10, z-score = -3.66, R) >consensus UAAAAUGCUUAUUGAGAUAGACAUUUCCGAAGCAUUUUGUAUAAAUGUCCUUACGUAUAAGGACCA___GUCUUUACCUUUGUU ((((((((((...(((((....)))))..)))))))))).......(((((((....))))))).................... (-13.94 = -14.94 + 1.00)
| Location | 412,712 – 412,793 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 91.00 |
| Shannon entropy | 0.15500 |
| G+C content | 0.33095 |
| Mean single sequence MFE | -17.38 |
| Consensus MFE | -13.02 |
| Energy contribution | -13.38 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 412712 81 - 24543557 AACAAAGGUAAAGAC---UGGUCCUUAUACGUAAGGACAUUUAUACAAAAUGCUUCGGAAAUGUCUAUCUCAAUAAGCAUUUUA .......(((.(((.---..(((((((....))))))).))).)))(((((((((.(((........)))....))))))))). ( -17.60, z-score = -2.73, R) >droEre2.scaffold_4784 408228 81 - 25762168 AACAAAGGUAAAGAC---GGCUCUUUAUAGGUAAGGACAUUCACACAAAAUGCUGCGGAAAUGUCUAUCUCAGUAAGCAUUUUA .((....(((((((.---...)))))))..))..(((((((..(.((......)).)..))))))).................. ( -14.00, z-score = -0.67, R) >droYak2.chr3L 388403 84 - 24197627 AACAAAGGUCUUUACCUUUGGUCUUUAUACGUAAGGACAUUUAUACAAAAUGCUUGGGAAAUGUCUAUCUCAGUAAGCUUUUUA ..(((((((....)))))))(((((((....)))))))........((((.((((((((........)))))...))).)))). ( -20.10, z-score = -2.82, R) >droSec1.super_2 435151 81 - 7591821 AACAAAGGUAAAGAC---UGGUCCUUAUACGUAAGGACAUUUAUACAAAAUGCUUCGGAAAUGUCUAUCUCAAUAAGCAUUUUA .......(((.(((.---..(((((((....))))))).))).)))(((((((((.(((........)))....))))))))). ( -17.60, z-score = -2.73, R) >droSim1.chr2R 8631909 81 - 19596830 AACAAAGGUAAAGAC---UGGUCCUUAUAGGUAAGGACAUUUAUACAAAAUGCUUCGGAAAUGUCUAUCUCAAUAAGCAUUUUA .......(((.(((.---..(((((((....))))))).))).)))(((((((((.(((........)))....))))))))). ( -17.60, z-score = -2.42, R) >consensus AACAAAGGUAAAGAC___UGGUCCUUAUACGUAAGGACAUUUAUACAAAAUGCUUCGGAAAUGUCUAUCUCAAUAAGCAUUUUA ....................(((((((....)))))))........(((((((((.(((........)))....))))))))). (-13.02 = -13.38 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:50 2011