| Sequence ID | dm3.chr3L |
|---|---|
| Location | 389,612 – 389,709 |
| Length | 97 |
| Max. P | 0.783949 |
| Location | 389,612 – 389,709 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 81.90 |
| Shannon entropy | 0.28667 |
| G+C content | 0.53979 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -24.65 |
| Energy contribution | -25.03 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 389612 97 - 24543557 GACAACUUUGUUGCU-UUG-----UAUAUUGGAAGGGGAAUUUCCAGGGGGAAUUUCCAGCGCCUUCACGGGCGGCAAAGGGGGAUGAAAAACCCCAAUACGG .....((((((((((-(.(-----(.....((...((((((((((...))))))))))....))...)))))))))))))((((.(....).))))....... ( -34.70, z-score = -2.40, R) >droSim1.chr2R 8614035 94 - 19596830 GACAACUUUGUUGCU-UUG-----GCUAUUGGAAGGGGAAUUUCCAGGGGGA---UUGGGCGCCAUCACGGGCGGCAAAGGGGGCUGAAAAACCCCAAUACGG .....((((((((((-(..-----.((.(((((((.....)))))))..)).---..))))(((......))))))))))((((.(....).))))....... ( -31.40, z-score = -1.11, R) >droSec1.super_2 419183 94 - 7591821 GACAACUUUGUUGCU-UUG-----GCUAUUGGAAGGGGAAUUUCCAGGGGGA---UUGGGCGCCAUCACGGGCGGCAAAGGGGGCUGAAAAUCCCCAAUACGG .....((((((((((-(..-----.((.(((((((.....)))))))..)).---..))))(((......))))))))))((((.(....).))))....... ( -31.40, z-score = -0.92, R) >droYak2.chr3L 370108 84 - 24197627 GACAACUUUGUUGCUGUUGCAGUUGCUAUUGGAAGGGGAAUUUCCAGGGG-------------------CGGCAGCAAAGGGGGCGGAAAAACCCCAAUGCGG .....(((((((((((((((....))..(((((((.....))))))).))-------------------)))))))))))((((........))))....... ( -32.60, z-score = -2.30, R) >consensus GACAACUUUGUUGCU_UUG_____GCUAUUGGAAGGGGAAUUUCCAGGGGGA___UUGGGCGCCAUCACGGGCGGCAAAGGGGGCUGAAAAACCCCAAUACGG .....((((((((((.............(((((((.....)))))))((.(.........).))......))))))))))((((........))))....... (-24.65 = -25.03 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:48 2011