| Sequence ID | dm3.chr3L |
|---|---|
| Location | 356,318 – 356,380 |
| Length | 62 |
| Max. P | 0.690271 |
| Location | 356,318 – 356,380 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 62.81 |
| Shannon entropy | 0.69514 |
| G+C content | 0.44187 |
| Mean single sequence MFE | -8.89 |
| Consensus MFE | -3.90 |
| Energy contribution | -3.73 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 356318 62 - 24543557 ----GUCCAAGGGAUCAGACGCAUGCGUCAAACACUCCCAACCUUCAAAUA---ACUUUCGUUAGAUUC ----......((((...((((....))))......))))..........((---((....))))..... ( -10.90, z-score = -1.58, R) >droSim1.chrU 11420043 62 - 15797150 ----GACCAAGGGAUCAGACGCAUGCGUCAAACACUGCCAACCUUCAAAUA---ACUUACGCUACGUUC ----((((...)).)).((((....))))......................---............... ( -5.80, z-score = 1.09, R) >droSec1.super_2 385871 66 - 7591821 GACCAAGCAAGGGAUCAGACGCAUGCGUCAAACACUCCCAACCUUAAAAUA---ACUUACGUUACGUUC .....(((..((((...((((....))))......))))..........((---((....)))).))). ( -11.00, z-score = -1.29, R) >droYak2.chr3L 336302 59 - 24197627 -----GACCAGAGAUCAGACGCAUGCGUCAAACGCUCCAAACUCUCAAACAUAUAAUUACGUUA----- -----.....(((....((((....)))).....)))...........................----- ( -7.50, z-score = -0.90, R) >droEre2.scaffold_4784 356866 50 - 25762168 ----GACCAAGGGACCAGACGCAUGCGCCAAACUCUCCCAACCUUCAAACA---AAU------------ ----......((((......((....)).......))))............---...------------ ( -6.22, z-score = -0.66, R) >droMoj3.scaffold_6308 422604 63 + 3356042 ----GUUGUUGUAAUUAGCGGUAUUUGGUAUGUACU-CAAAUAUCCAGAAGC-CAUUUUCGUAAAAUUU ----...((((....))))(((.(((((.((((...-...))))))))).))-)............... ( -11.90, z-score = -1.85, R) >consensus ____GACCAAGGGAUCAGACGCAUGCGUCAAACACUCCCAACCUUCAAAUA___ACUUACGUUA__UUC .................((((....))))........................................ ( -3.90 = -3.73 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:48 2011