| Sequence ID | dm3.chr3L |
|---|---|
| Location | 331,902 – 331,978 |
| Length | 76 |
| Max. P | 0.523090 |
| Location | 331,902 – 331,978 |
|---|---|
| Length | 76 |
| Sequences | 7 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 63.56 |
| Shannon entropy | 0.68150 |
| G+C content | 0.40500 |
| Mean single sequence MFE | -17.83 |
| Consensus MFE | -6.90 |
| Energy contribution | -7.50 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 331902 76 + 24543557 AAAUAAUUAAAAGAAUUAUCAAUGGCGAGACCAUGGCUAACUGAUCCACGCUUGUUGGAUUUUUGGUCGAUUCGUU-------- ............(((((....((((.....))))((((((..((((((.......)))))).)))))))))))...-------- ( -17.40, z-score = -1.44, R) >droSim1.chr2R 8557553 76 + 19596830 AUAUAACUAAAAGAAUUAUCAAUGGCGAGACCAUGGCUAACUGAUCCACGCUUGUUGGAUUUUUGGUCGAUUCGUU-------- ............(((((....((((.....))))((((((..((((((.......)))))).)))))))))))...-------- ( -17.40, z-score = -1.48, R) >droSec1.super_2 363607 76 + 7591821 AUAUAACUAAAAGAAUUAUCAAUGGCGAGACCAUGGCUAACUGAUCCACGCUUGUUGGAUUUUUGGUCGAUUCGUU-------- ............(((((....((((.....))))((((((..((((((.......)))))).)))))))))))...-------- ( -17.40, z-score = -1.48, R) >droYak2.chr3L 311575 76 + 24197627 AAAUAACGAAAAGAAUUAUCCAAGGCGAAACCAUGGCCAACUGAUCCACGCUUGUUGGAUUUUCGGUUGAUUCGUU-------- ....((((((.........(((.((.....)).))).(((((((((((.......))))...))))))).))))))-------- ( -18.50, z-score = -1.35, R) >droEre2.scaffold_4784 331914 76 + 25762168 AUAUAACGAAAAGAGUGAUCCAAGGCGAAACCAUGGCCGACUGAUCCAUGCUUGUUGGAUUUUUGGUCAAUUCGUU-------- ....((((((..((....))...((.....)).(((((((..((((((.......)))))).))))))).))))))-------- ( -20.50, z-score = -1.67, R) >dp4.chrXR_group8 1223357 83 + 9212921 ACAGCGCCAGUUUGGGGAUCGGAGAUGUGGACAUUGUUG-UUGUUGGACCGCAGGAGAGAUCUCUUUGGGUUUCUCGACUUGUU ...(((...(((..(.((.(((.((((....)))).)))-)).)..))))))..(((((((((....)))))))))........ ( -21.90, z-score = 0.42, R) >droGri2.scaffold_15110 3964234 76 + 24565398 UUGUGGUGGCAAUAAUUAUCAGCCACACGAGCAUUGCAAACAUUUUAAUGAUAAAAGAUCUCUUCGCUAAUUCCUC-------- ..((((((((...........)))))..(((.(((.....(((....)))......))))))..))).........-------- ( -11.70, z-score = -0.16, R) >consensus AUAUAACGAAAAGAAUUAUCAAAGGCGAGACCAUGGCUAACUGAUCCACGCUUGUUGGAUUUUUGGUCGAUUCGUU________ .......................((((((....((((((...((((((.......))))))..)))))).))))))........ ( -6.90 = -7.50 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:46 2011