| Sequence ID | dm3.chr3L |
|---|---|
| Location | 321,026 – 321,120 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 321,026 – 321,120 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 87.34 |
| Shannon entropy | 0.20937 |
| G+C content | 0.51572 |
| Mean single sequence MFE | -24.36 |
| Consensus MFE | -22.61 |
| Energy contribution | -22.57 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 321026 94 - 24543557 CUUUCAGGGCGCAUAUGGUUUUAUUU---------CGAUUCCCCCUGGACCAGUUCGCACUCUCUUAGUCGCUGUCGAUUAACCCAGUGGUAGAAGCCACAUG ......(((.((...((((((.....---------...........))))))....))......(((((((....)))))))))).(((((....)))))... ( -21.99, z-score = -0.39, R) >droSim1.chr2R 8546758 94 - 19596830 CUUUGAGGGCGCAUAUGGUUUUAUUC---------CGAUUCCCCCUGGACCAGUUCGCACUCUCUUAGUCGCUGUUGAUUAACCCAGUGGUAGAAGCCACAUG ....(((((.((...((((((.....---------...........))))))....)).)))))(((((((....)))))))....(((((....)))))... ( -23.59, z-score = -0.55, R) >droSec1.super_2 352703 94 - 7591821 CUUUGAGGGCGCAUAUGGUUUUAUUC---------CGAUUCCCCCUGGACCAGUUCGCACUCUCUUAGUCGCUGUCGAUUAACCCAGUGGUAGAAGCCACAUG ....(((((.((...((((((.....---------...........))))))....)).)))))(((((((....)))))))....(((((....)))))... ( -24.89, z-score = -0.93, R) >droEre2.scaffold_4784 313159 103 - 25762168 CUUUGAGAGCGCAUAUGGUUCCAUUUACCACCGCGCGAUUCCCCCUGGACCAGUUCGCACUCUCCCAGUCGCAGUCGAUUUAACUAGUGGUAGAAGCCACAUG ........((((...((((.......))))..))))((((.(..((((...(((....)))...))))..).))))..........(((((....)))))... ( -26.10, z-score = -1.30, R) >droYak2.chr3L 300106 103 - 24197627 CUUCGAGAGCGCAUAUGGUUCCAUUUACAACAGCGCGAUUCCCCCUGGACCAGUUCGCACUCUCCCAGUCGCCGUCGAUUAAACUAGUGGUAGAAGCCACAUG ....(((((.((...((((.(((......................)))))))....)).)))))..(((((....)))))......(((((....)))))... ( -25.25, z-score = -0.94, R) >consensus CUUUGAGGGCGCAUAUGGUUUUAUUU_________CGAUUCCCCCUGGACCAGUUCGCACUCUCUUAGUCGCUGUCGAUUAACCCAGUGGUAGAAGCCACAUG ....(((((.((...((((((.........................))))))....)).))))).((((((....)))))).....(((((....)))))... (-22.61 = -22.57 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:45 2011