| Sequence ID | dm3.chr3L |
|---|---|
| Location | 317,229 – 317,345 |
| Length | 116 |
| Max. P | 0.874201 |
| Location | 317,229 – 317,345 |
|---|---|
| Length | 116 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 65.48 |
| Shannon entropy | 0.72524 |
| G+C content | 0.56627 |
| Mean single sequence MFE | -37.63 |
| Consensus MFE | -11.06 |
| Energy contribution | -11.03 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 317229 116 + 24543557 UGAUUCGGGCCGCCAUGGUCGUGGACGACCCUAAUAUGGUGGCCUGGCUGCCAUACCUUAACUUUCUUCGCUUUCUGAAGCGAAACUUCUAUCCCAGGACUGAUUUGCGCCGCUUA .....((((((((((((((((....))))).....)))))))))))((.((((.............(((((((....)))))))...((..((....))..))..)).)).))... ( -41.20, z-score = -3.23, R) >droYak2.chr3L 296179 116 + 24197627 UGAUCCGGGCUGCCUGGGUCGUGGACAACCCGUAUCUGGUGGCCUCGCUGCCGUACCUCAACUUCCUUCGCUUCCUGAAGCGGAACUUUUUCCGCAGGACUGACUUGCGCCGCCUG .((((((((...))))))))((((.(...........((..((...))..))(((..(((...((((.(((((....))))((((....))))).)))).)))..))))))))... ( -38.80, z-score = -0.76, R) >droEre2.scaffold_4784 309262 116 + 25762168 UGAUUCGGGCCGCCGCGGUCGUGGACGACCCCAAUCUGGUGGCCUCGCUGCCGUAUCUUAACUUCCUUCGCUUCCUGAAGCGGAACUUCUUCCGUAACACUGACUUGCGCCGCUUG ......(((((((((.(((((....)))))......))))))))).((.((.(((..(((.........((((....))))((((....)))).......)))..))))).))... ( -35.70, z-score = -0.75, R) >droSec1.super_2 348967 116 + 7591821 UGAUCCGCGCCGCCAUGGUCGUGGACGACCCUGAUAUGGUGGCUCCGCUGCCAUACCUUAACUUCCUUCGCUUCCUGAAGCGGAACUUCUAUCCCAGGACUGAUUUGCGCCGCUUA ......(((.(((...(((((....)))))(((.(((((..((...))..)))))...........(((((((....)))))))..........))).........))).)))... ( -36.70, z-score = -1.93, R) >droSim1.chr2R 8542998 116 + 19596830 UGAUUCGCGCCGCCAUGGUCGUGGACGACCCUGAUAUGGUGGCUCCGCUGCCAUACCUUAACUUCCUUCGCUUCCUGAAGCGGAACUUCUAUCCCAGGACUGAUUUGCGCCGCUUA ......(((.(((...(((((....)))))(((.(((((..((...))..)))))...........(((((((....)))))))..........))).........))).)))... ( -36.70, z-score = -1.93, R) >dp4.chrXR_group8 7808794 113 - 9212921 UGAUCAGAGCCAGAGACAUUGUUGACGACCCGCGCCUGGUGGCCCCGAAUCCGUACCUUAACUUUUUGCGCUACCUCAAGCGCAAG---AAGCCUCGCUACGGCCUCAGGCGGCUC ......(((((.......(((....))).....((((((.((((.((....))........(((((((((((......))))))))---))).........))))))))))))))) ( -41.70, z-score = -2.43, R) >droPer1.super_32 72272 113 + 992631 UGAUCAGAGCCAGAGACAUUGUUGACGACCCGCGCCUGGUGGCCCCGAAUCCGUACCUUAACUUUUUGCGCUACCUCAAGCGCAAG---AAGCCUCGCUACGGCCUCAGGCGGCUC ......(((((.......(((....))).....((((((.((((.((....))........(((((((((((......))))))))---))).........))))))))))))))) ( -41.70, z-score = -2.43, R) >droMoj3.scaffold_6540 26974026 109 - 34148556 ----GUUGGCCCGUGAUAUUUUAGAUAAUCCACUUUUGGUAGCUCCGCUACCAUAUAUCAACUUUCUACGUUACUUUAAGCGCAAG---CAUCCCAAAUAUGGAGUCCGCCGGCUG ----((((((..(((((....((((...........(((((((...)))))))...........)))).))))).....((....)---)...(((....))).....)))))).. ( -28.65, z-score = -2.48, R) >droVir3.scaffold_13047 2548519 107 + 19223366 ------GGGCUUACGACAUUUUGGACAAUCCGAACUUGGUAGCACCGCUACCCUAUCUAAACUUUUUGCGUUAUCUCAAACGCAAG---CACCCACGUUUUGGGUUCCGGCGCCUG ------((((...((....(((((.....)))))...((((((...))))))............((((((((......))))))))---.(((((.....)))))..))..)))). ( -30.40, z-score = -2.10, R) >droAna3.scaffold_13337 21010058 109 - 23293914 ------GAGACGGCAUG-UGGUGGGCAGGCCCUACCUGGUGGCCCCCCUGCCGUACCUCAACUUCCUGCGCCACCUCAAGCACAACGUCUUCAGGCGCUACGGGAUGCGCCGACUG ------((((((((.((-.((((((((((........((((((......)))..))).......))))).))))).)).))....))))))..(((((........)))))..... ( -44.76, z-score = -1.29, R) >consensus UGAUCCGGGCCGCCGAGGUCGUGGACGACCCGAAUCUGGUGGCCCCGCUGCCGUACCUUAACUUCCUUCGCUACCUGAAGCGCAACUUCUACCCCAGCACUGACUUGCGCCGCCUG ....................................(((((((...))))))).............((((((......))))))................................ (-11.06 = -11.03 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:44 2011