| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,025,693 – 4,025,745 |
| Length | 52 |
| Max. P | 0.752722 |
| Location | 4,025,693 – 4,025,745 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 68.18 |
| Shannon entropy | 0.61880 |
| G+C content | 0.45023 |
| Mean single sequence MFE | -13.66 |
| Consensus MFE | -4.97 |
| Energy contribution | -6.06 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4025693 52 + 23011544 UUACUCCCGAAUGCCGUCACUUGGGUGUGAAAAGCAUUUCUACGGAGAAUCC----- ...((((.((((((..((((......))))...))))))....)))).....----- ( -15.60, z-score = -2.39, R) >dp4.chr4_group3 9742038 50 - 11692001 CAGUGACUGGAUGCAAUCAUUGAGGUGUGAUGGAAAUUUCUCCGGAGAAG------- ((((((.((....)).)))))).((.(.(((....))).).)).......------- ( -10.00, z-score = -0.19, R) >droAna3.scaffold_13345 4168 55 - 5285 UUACCUUAGAACACCUU--UUAAGUUUCAAAGAGUAUUUCUAGAGGAAGUAUCCCUG ...((((((((...(((--((........)))))...)))).))))........... ( -8.00, z-score = -0.18, R) >droEre2.scaffold_4929 4085816 52 + 26641161 UUAAUCCAGAAUGCCGUCACUUGGGUGUGAAAAGCACUUCUCGGAAGAAUCC----- ....((((((((((..((((......))))...))).)))).))).......----- ( -14.20, z-score = -1.94, R) >droYak2.chr2L 4044457 52 + 22324452 UUAAUCCAGAAAGCCGUCACUUGGGUGUGAAAAUCACUUCUCGGGUGAAUCC----- ................(((((((((.(((.....)))..)))))))))....----- ( -14.40, z-score = -1.88, R) >droSec1.super_5 2128774 52 + 5866729 UUACUCCAGAAUGCCGUCACUUGGGUGUGAAAAGCAUUUCUCGGGAGAAUCG----- ...((((.((((((..((((......))))...))))))....)))).....----- ( -16.70, z-score = -2.41, R) >droSim1.chr2L 3986759 52 + 22036055 UUACUCCAGAAUGCCGUCACUUGUGUGUGAAAAGCAUUUCUCGGGAGAAUCG----- ...((((.((((((..((((......))))...))))))....)))).....----- ( -16.70, z-score = -2.94, R) >consensus UUACUCCAGAAUGCCGUCACUUGGGUGUGAAAAGCAUUUCUCGGGAGAAUCC_____ ....((((((((((..((((......))))...))).)))).)))............ ( -4.97 = -6.06 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:10 2011