| Sequence ID | dm3.chr3L |
|---|---|
| Location | 314,198 – 314,281 |
| Length | 83 |
| Max. P | 0.976885 |
| Location | 314,198 – 314,281 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 80.08 |
| Shannon entropy | 0.38528 |
| G+C content | 0.49960 |
| Mean single sequence MFE | -19.45 |
| Consensus MFE | -11.32 |
| Energy contribution | -11.63 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 314198 83 - 24543557 AUAAAAAGGACGAUCUGAUAUGAGAGCCAUAUAUUCCGCGCCAAUGAGCGGAGACGACAGCGCAAUUAGAUGAGAAAGACCCC ............(((((((.((...((......((((((........))))))......)).)))))))))............ ( -17.00, z-score = -2.24, R) >droSim1.chr2R 8539983 83 - 19596830 ACAAAAAGGACGAUCUGAUAUGAGAGCCAUAUAUUCCGCGCCAAUGAGCGGAGACGACAGGGCAAUUAGAUGAGAAAGACCCC .......((.(..(((.((.(((..(((.....((((((........)))))).......)))..))).)).)))..).)).. ( -20.40, z-score = -3.02, R) >droSec1.super_2 345969 83 - 7591821 ACAAAAAGGACGAUCUGAUAUGAGAGCCAUAUAUUCCGCGCCAAUGAGCGGAGACGACAGGGCAAUUAGAUGAGAAAGACCCC .......((.(..(((.((.(((..(((.....((((((........)))))).......)))..))).)).)))..).)).. ( -20.40, z-score = -3.02, R) >droYak2.chr3L 293595 83 - 24197627 AUAAAAAGGACGAUCUGAUAUGAGAGCCACAUAUUCCGCGCCAAUGAGCGGAGACGACAGGGCAAUUAGAUGAGAAAGACCCC .......((.(..(((.((.(((..(((.....((((((........)))))).......)))..))).)).)))..).)).. ( -20.40, z-score = -3.02, R) >droEre2.scaffold_4784 306667 83 - 25762168 ACAAAAAGGACGAUCUGAUAUGAGAGCCAUAUAUUCCGCGCCAAUGAGCGGAGACGACAGCGCAAUUAGAUGAGAAAGACCCC ............(((((((.((...((......((((((........))))))......)).)))))))))............ ( -17.00, z-score = -2.28, R) >droAna3.scaffold_13337 21002976 65 + 23293914 ---------------CGAUAUGAGGUCUACACGCUCCGUGGAACUGAACGGAGGUGACCGCACGGAGAGCUGAGUGGAGG--- ---------------.(((.....)))..(((.((((((........))))))))).((((.(((....))).))))...--- ( -21.50, z-score = -1.70, R) >consensus ACAAAAAGGACGAUCUGAUAUGAGAGCCAUAUAUUCCGCGCCAAUGAGCGGAGACGACAGCGCAAUUAGAUGAGAAAGACCCC ............(((((((.((...........((((((........)))))).........)))))))))............ (-11.32 = -11.63 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:37 2011