| Sequence ID | dm3.chr3L |
|---|---|
| Location | 293,367 – 293,498 |
| Length | 131 |
| Max. P | 0.897951 |
| Location | 293,367 – 293,498 |
|---|---|
| Length | 131 |
| Sequences | 4 |
| Columns | 139 |
| Reading direction | reverse |
| Mean pairwise identity | 63.25 |
| Shannon entropy | 0.54830 |
| G+C content | 0.50846 |
| Mean single sequence MFE | -35.92 |
| Consensus MFE | -17.99 |
| Energy contribution | -19.55 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.897951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 293367 131 - 24543557 CCAGAAAAACUCUUGUACCCAAAA----CAGUCAGUCGUUGGGCAGUUGAGGCAGGGAU----GCACAGAAGGGAAAUCCUUUAUAGAAACGAAACCUAUAUCGCGUGUCCAUCUACCUCAACAGGUCGAUAGAAGCGU ........((.(((.(((((((.(----(.....))..)))))..(((((((.((((((----((.(..(((((....)))))((((.........))))...).))))))..)).))))))).......)).))).)) ( -32.10, z-score = -0.51, R) >droSim1.chr2R 8517090 115 - 19596830 ----------------CCACAAAA----AUUCUCGUCGUUGGGCAGUUGAGGCAGGGAU----GCACAGAAGGGAAAUCCUUUAUAGAAACGAAACCUAUAACGCGUGUCCAUCCACCUCAACAGGUCGAGCGGAGAGU ----------------........----...(((..((((.(((.(((((((...((((----(.(((.(((((....)))))((((.........))))......))).))))).)))))))..))).))))..))). ( -38.80, z-score = -3.08, R) >droSec1.super_2 325226 115 - 7591821 ----------------CCACAAAA----AUUCUCGUAGUUGGGCAGUUGAGGCAGGGAU----GCACAGAAGGGAAAUCCUUUAUAGAAACGAAACCUAUAACGCGUGUCCAUCCACCUCAACAGGUCGAGCGGAGAGU ----------------........----((((((...(((.(((.(((((((...((((----(.(((.(((((....)))))((((.........))))......))).))))).)))))))..))).))).)))))) ( -37.00, z-score = -2.82, R) >droAna3.scaffold_13337 2249515 111 - 23293914 ----------------CCACAAAAACGUAUGUACAUCCUCCACUGGUGGGGGUGGGGGCGGCAGCACGUGAGGGACAUCCUC------AAGCAGGCUUUCGGGGUUCGGUU-CCUCCUUCAACAGGUCACACGU----- ----------------........((((.((.((..((((((....))))))((((((((......)))(((((((..((((------(((....)))..))))....)))-)))))))))....)))).))))----- ( -35.80, z-score = 0.09, R) >consensus ________________CCACAAAA____AUGCUCGUCGUUGGGCAGUUGAGGCAGGGAU____GCACAGAAGGGAAAUCCUUUAUAGAAACGAAACCUAUAACGCGUGUCCAUCCACCUCAACAGGUCGAGCGGAGAGU ...................................(((((.(((.(((((((...((((....((((.(((((.....))))).......((..........)).))))..)))).)))))))..))).)))))..... (-17.99 = -19.55 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:31 2011