| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,019,919 – 4,020,013 |
| Length | 94 |
| Max. P | 0.599235 |
| Location | 4,019,919 – 4,020,013 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 70.23 |
| Shannon entropy | 0.56103 |
| G+C content | 0.37661 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -9.64 |
| Energy contribution | -10.15 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4019919 94 - 23011544 UUUUCACGCUAGCCCUUGAAAGUAUGCUACACUUUUGUAGCUCA---GCGAAGAAAUGAACCGUUUGUUCGGUUA-----AGGUAAGCUUGCAUACUUUUCA .......((.(((((((((......((((((....))))))...---.((((.(((((...))))).)))).)))-----)))...))).)).......... ( -24.50, z-score = -1.54, R) >droEre2.scaffold_4929 4080057 95 - 26641161 UGUUCGCACAAGCCUUGGAAAGUAUGCUAUGCUUUUGUAGCUCA---GCGGAGAAACAAACC----GUUGGGUAAAAACUAAGAAGACUUGCAUACUUUUCG .....((....))...(((((((((((....(((((...(((((---((((.........))----)))))))........)))))....))))))))))). ( -29.60, z-score = -2.88, R) >droYak2.chr2L 4038376 99 - 22324452 UUUUCACACAAGCCUUUGAAAGUAUGCUACACUUUUGUAGCUCA---GCGAAGUUAAGAACCGUUAGUUGGCUGAAAACUAAGAAAGCCUGCAUACUUUUCG .................((((((((((....(((((.(((.(((---((.((.((((......)))))).)))))...))).)))))...)))))))))).. ( -23.70, z-score = -1.31, R) >droSim1.chr2L 3980620 99 - 22036055 UUUUUACGCUAGUUUAUAAAAGUAUGCUACACUUCUGUAGCUCA---GCGAAGAAAUUAACCGUUUUAUGGGCUAAAACUAAGAAAGCUUGCAUACUUUUCA .................((((((((((.....((((.(((((((---(((...........)))....)))))))......)))).....)))))))))).. ( -21.40, z-score = -1.23, R) >droSec1.super_5 2123099 99 - 5866729 UUUUUACGCUAGCCUUUGAAAGUAUGCUACACUUUUGUAGCUCA---GCGAAGAAAUGAACCGUUUGUUGGGUAAAAACUAAGAAGGCUUGCAUACUUUUCA .......((.(((((((...(((..((((((....))))))(((---((((((........).))))))))......)))..))))))).)).......... ( -26.80, z-score = -2.01, R) >droWil1.scaffold_180703 1992880 90 - 3946847 UUUUCAUGCU-GCAAGUAAAAGUAUGCAAUGAAUUUUUUACUUAUGUUCACAAAAUUGGCUCGUGUCUUGGCU-----------AAGUUUUCGUCUUCAUUG ....((((((-.........))))))(((((((...........((....))...((((((........))))-----------)).........))))))) ( -13.10, z-score = 0.28, R) >consensus UUUUCACGCUAGCCUUUGAAAGUAUGCUACACUUUUGUAGCUCA___GCGAAGAAAUGAACCGUUUGUUGGGUAAAAACUAAGAAAGCUUGCAUACUUUUCA .................((((((((((((((....))))(((((...(((...........)))....))))).................)))))))))).. ( -9.64 = -10.15 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:10 2011