| Sequence ID | dm3.chr3L |
|---|---|
| Location | 266,463 – 266,573 |
| Length | 110 |
| Max. P | 0.523074 |
| Location | 266,463 – 266,573 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 69.72 |
| Shannon entropy | 0.50374 |
| G+C content | 0.47490 |
| Mean single sequence MFE | -26.80 |
| Consensus MFE | -14.90 |
| Energy contribution | -14.78 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 266463 110 + 24543557 AAAUUAUUGAAGCCGAUGGUACAAUG--CAAAUCACAACUGCGUGUAGCGAUCAGACCCAAUGGUAAAAGUAAAAGACCAUUGGCUUUAACUACAGGUAGUCUGUGCAGGAC ......((((((((((((((....((--(.........(((((.....))..)))(((....)))....)))....)))))))))))))).(((((.....)))))...... ( -29.20, z-score = -1.81, R) >droSim1.chr2R 8490581 89 + 19596830 --------------AAAUUCUUGAAG---ACGUCACAGCUGCGUGUGGCGAUCAGACC------CUAUGGUAAGAUACCACCGGCUUUUACUACAGCUAGUCUGUGCAGGAC --------------....(((((...---.(((((((......)))))))..(((((.------...(((((...)))))..((((........)))).)))))..))))). ( -24.80, z-score = -0.76, R) >droSec1.super_2 293850 89 + 7591821 --------------AAAUUCUUGAAG---CCGUCACAGCUGCGUGUGGCGAUCAGACC------GUAUGGUAAGAUACCACCGGCUUUUACUACAGGUAGUCUGUGCAGGAC --------------............---((..(((((((((.(((((..(..((.((------(..(((((...))))).))))).)..))))).)))).)))))..)).. ( -30.00, z-score = -1.90, R) >droYak2.chr3L 245006 103 + 24197627 AAACUAACCAAGCCGAUGUUACAAAGUGCGUGUCACAGCUGCGUGUAGCGAUCAGACU------UAAAGGUAAGAGACCACCGGCAUUUACUAAAGGCAGUCUGUAGAA--- ...(((.....((((((((((((....((........))....)))))).))).....------....((((((.(.((...))).))))))...)))......)))..--- ( -21.30, z-score = 0.86, R) >droEre2.scaffold_4784 255209 104 + 25762168 AAAUUACCCACACCGAUGUUACAAAA-GCAUGUCACAGCUGCGUGUAGCGAUCAGACC------CAAUGGUAAGAGACC-CCGGCAUUUACUACAGGCAGUCUGUGCAGGAG ............((.(((((.....)-))))(.(((((((((.(((((..(...(.((------....(((.....)))-..)))..)..))))).)))).)))))).)).. ( -28.70, z-score = -1.48, R) >consensus AAA_UA___A__CCGAUGUUACAAAG__CACGUCACAGCUGCGUGUAGCGAUCAGACC______CAAUGGUAAGAGACCACCGGCUUUUACUACAGGUAGUCUGUGCAGGAC .................................(((((((((.(((((..(...(.((..........(((........))))))..)..))))).)))).)))))...... (-14.90 = -14.78 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:24 2011