| Sequence ID | dm3.chr3L |
|---|---|
| Location | 228,492 – 228,604 |
| Length | 112 |
| Max. P | 0.995487 |
| Location | 228,492 – 228,604 |
|---|---|
| Length | 112 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 86.58 |
| Shannon entropy | 0.28610 |
| G+C content | 0.54143 |
| Mean single sequence MFE | -40.24 |
| Consensus MFE | -29.92 |
| Energy contribution | -29.57 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.81 |
| SVM RNA-class probability | 0.995487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 228492 112 + 24543557 --CAUUGCACCGCACAGAUAU-GUGCGUUCGGUCCACGCUAAAGGGAAUCAAAUGCGUUUGGACCGAGAGCCGAUACACC-GCACCAUCACCAGUAUUCGC-UGU-GAAGUGAGCUGA --...(((..((((((....)-)))))((((((((((((...............))))..))))))))............-))).......((((..((((-(..-..))))))))). ( -37.06, z-score = -1.83, R) >droSim1.chr3L 195288 112 + 22553184 --CAUUGCACCGCACAGAUAU-GUGCGUUCGGUCCACGCUAAAGGGAAUCAAAUGCGUUUGGACCGAGAGCCGAUACACC-GCACCAUCACCAGUAUUCGC-UGU-GAAGUGAGCUGA --...(((..((((((....)-)))))((((((((((((...............))))..))))))))............-))).......((((..((((-(..-..))))))))). ( -37.06, z-score = -1.83, R) >droSec1.super_2 256282 112 + 7591821 --CAUUGCACCGCACAGAUAU-GUGCGUUCGGUCCACGCUAAAGGGAAUCAAAUGCGUUUGGACCGAGAGCCGAUACACC-GCACCAUCACCAGUAUUCGC-UGU-GAAGUGAGCUGA --...(((..((((((....)-)))))((((((((((((...............))))..))))))))............-))).......((((..((((-(..-..))))))))). ( -37.06, z-score = -1.83, R) >droYak2.chr3L 206984 112 + 24197627 --CAUUGCACCGCACAGAUAU-GUGCGUUCGGUCCACGCUAAAGGGAAUCAAAUGCGUUUGGACCGAGAGCCGCUACACC-GCACCAUCACCAGUAUUCGC-UGU-GAAGUGAGCUGA --........((((((....)-)))))((((((((((((...............))))..))))))))(((((((.(((.-((................))-.))-).)))).))).. ( -37.75, z-score = -1.74, R) >droEre2.scaffold_4784 216832 112 + 25762168 --CAUUGCACCGCACAGAUAU-GUGCGUUCGGUCCACGCUAAAGGGAAUCAAAUGCGUUUGGACCGAGAGCCGCUGCACC-GCACCAUCACCAGUAUUCGC-UGU-GAAGUGAGCUGA --........((((((....)-)))))((((((((((((...............))))..))))))))(((((((.(((.-((................))-.))-).)))).))).. ( -37.75, z-score = -1.24, R) >droAna3.scaffold_13337 20983870 114 - 23293914 CAAAUUGCACCGCACAGAAAUUGUGCGUUCGGUCCACGCUAAAGGGAAACAAAUGCGUUUGGACCGAGAGCCGCUACUAC-GCACCAUCACCAG-AUUCGC-UGC-GAAGUGAGCUGA ......((..(((((((...)))))))((((((((((((.....(....)....))))..)))))))).)).((((((.(-((((.(((....)-))..).-)))-).))).)))... ( -40.20, z-score = -2.83, R) >dp4.chrXR_group8 7782969 115 - 9212921 CAAUUGGCACCGCACAGAGAU-GUGCGUUCGGUCCACGCUAAAGGGAAACAAAUGCGUUUGGACCGAGAGCCGCUACACC-GCACCAUCACCAGCAUUCGC-UGAAGAAGUGAGCUGA .....(((..((((((....)-)))))((((((((((((.....(....)....))))..)))))))).)))((......-))........((((..((((-(.....))))))))). ( -46.10, z-score = -4.08, R) >droPer1.super_32 45631 115 + 992631 CAAUUGGCACCGCACAGAGAU-GUGCGUUCGGUCCACGCUAAAGGGAAACAAAUGCGUUUGGACCGAGAGCCGCUACACC-GCACCAUCACCAGCAUUCGC-UGAAGAAGUGAGCUGA .....(((..((((((....)-)))))((((((((((((.....(....)....))))..)))))))).)))((......-))........((((..((((-(.....))))))))). ( -46.10, z-score = -4.08, R) >droWil1.scaffold_180949 137992 102 + 6375548 --CAUUGCACCGCACAGAAAU-GUGCGCUCGGUCCACGCUAAAGGGAAACAAAUGCGUUUGGACCGAGACCCGCCACACCCACACCA-CACCAUCA--CACCAGCUGA---------- --....((..((((((....)-)))))((((((((((((.....(....)....))))..))))))))...................-........--.....))...---------- ( -35.10, z-score = -4.23, R) >droVir3.scaffold_12963 12815385 112 + 20206255 --CAUUGCACCGCAUAGAAAU-AUGCGCUCGGUCCGCGCUAAAGGGAAACAAAUGCGUUUGGACCGAGACCCGCCACACC-ACA-AAAUACCAGCAGUCGC-UAAUGAGGCGAGCUGA --....((..((((((....)-)))))((((((((((((.....(....)....))))..))))))))....))......-...-......((((..((((-(.....))))))))). ( -44.10, z-score = -4.69, R) >droMoj3.scaffold_6500 25106510 113 - 32352404 --CAUUGCACCGCAUAGAAAU-AUGCGCUCGGUCCGCGCUAAAGGGAAACAAAUGCGUUUGGACCGAGACCCGCCACACC-ACACAAUCACCAGCACUCGC-UUAAGAGGCGAGCUGA --....((..((((((....)-)))))((((((((((((.....(....)....))))..))))))))....))......-..........((((..((((-(.....))))))))). ( -44.20, z-score = -4.88, R) >droGri2.scaffold_15074 5392414 114 - 7742996 --CAUUGCACCGCAUAGAAAU-AUGCGCUCGGUCCGCGCUAAAGGGAAACAAACGCGUUUGGACCGAGACCCGCCACACC-ACACAAACACCAGCAUCCGCACUAAGAGGCGAGCUGA --....((..((((((....)-)))))((((((((((((.....(....)....))))..))))))))....))......-..........((((...(((........))).)))). ( -40.40, z-score = -4.18, R) >consensus __CAUUGCACCGCACAGAAAU_GUGCGUUCGGUCCACGCUAAAGGGAAACAAAUGCGUUUGGACCGAGAGCCGCUACACC_GCACCAUCACCAGCAUUCGC_UGA_GAAGUGAGCUGA ..........(((((.......)))))((((((((((((.....(....)....))))..)))))))).......................((((..((((........)))))))). (-29.92 = -29.57 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:18 2011