| Sequence ID | dm3.chr3L |
|---|---|
| Location | 205,511 – 205,593 |
| Length | 82 |
| Max. P | 0.918022 |
| Location | 205,511 – 205,593 |
|---|---|
| Length | 82 |
| Sequences | 14 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 74.29 |
| Shannon entropy | 0.59368 |
| G+C content | 0.54445 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -13.52 |
| Energy contribution | -13.18 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.918022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 205511 82 - 24543557 AUCUGGUCCAUUCGUUGGGGCUAUUGACGAGGGAACCACUUCCGCGCGAUUUAUUAUAUUUCGUGCGGGCACUGACGAAAUU ...((((((.(((((..(.....)..))))))).))))..(((((((((...........)))))))))............. ( -27.70, z-score = -2.45, R) >droSim1.chr3L 171591 82 - 22553184 AUCUGGUCCAUUCGUUGGGGCUAUUGACGAGGGAACCACUUCCGCGCGAUUUAUUAUAUUUCGUGCGGGCACUGACGAAAUU ...((((((.(((((..(.....)..))))))).))))..(((((((((...........)))))))))............. ( -27.70, z-score = -2.45, R) >droSec1.super_2 228112 82 - 7591821 AUCUGGUCCAUUCGUUGGGGCUAUUGACGAGGGAACCACUUCCGCGCGAUUUAUUAUAUUUCGUGCGGGCACUGACGAAAUU ...((((((.(((((..(.....)..))))))).))))..(((((((((...........)))))))))............. ( -27.70, z-score = -2.45, R) >droYak2.chr3L 183685 82 - 24197627 AUGUGGUCCAUUCGUUGGGGCUAUUGACGAGGGAACCACCUCAGCGCGAUUUAUAAUAUUUCGUGCGGGCACUGACGAAAUU ..........(((((..(.(((......((((......)))).((((((...........)))))).))).)..)))))... ( -28.40, z-score = -2.54, R) >droEre2.scaffold_4784 194163 82 - 25762168 AUCUGGUCCAUUCGUUGGGGCUAUUGACGAGGGAACCACCUCAGCGCGAUUUAUAAUAUUUCGUGCGGGCACUGACGAAAUU ..........(((((..(.(((......((((......)))).((((((...........)))))).))).)..)))))... ( -28.40, z-score = -2.73, R) >droAna3.scaffold_13337 8607325 82 + 23293914 CACAGGCCCGUAUGUGGGUGCCAUCGACGAGGGCACCACCUCGGCCCGAUUCAUAAUUUUCCGCGCCGGCACCGAUGACAUU ((((........))))((((((......((((......))))(((.((.............)).)))))))))......... ( -28.72, z-score = -1.01, R) >dp4.chrXR_group8 7758995 81 + 9212921 -GUAGGCCCGUUUGUGGGAGCCAUUGAUGAGGGCACCACCUCGGCCCGCUUCAUAAUAUUCCGCGCUGGCACUGACGACAUU -.((((((.((..((((((.....(((...((((.........))))...))).....)))))))).))).)))........ ( -25.10, z-score = -0.11, R) >droPer1.super_32 21656 81 - 992631 -GUAGGCCCGUUUGUGGGAGCCAUUGAUGAGGGCACCACCUCGGCCCGCUUCAUAAUAUUCCGCGCUGGCACUGACGACAUU -.((((((.((..((((((.....(((...((((.........))))...))).....)))))))).))).)))........ ( -25.10, z-score = -0.11, R) >droWil1.scaffold_180698 4918343 78 - 11422946 ----GGCCCCUUUGUGGGCGCCAUUGAUGAUGGCACCACAUCGGCACGUUUCAUUAUAUUCCGAGCUGGAACCGAUGACAUU ----.(((....(((((..((((((...)))))).)))))..))).....(((((...((((.....))))..))))).... ( -25.00, z-score = -1.46, R) >droVir3.scaffold_13049 561691 78 - 25233164 ----GGGCCAUUUAUUGGCGCCAUUGAUGAGGGCACGACCUCGGCGCGCUUUAUGAUAUUCCGUGCGGGCACCGAUGACAUC ----((((((.....))))(((.....(((((......))))).(((((.............)))))))).))......... ( -26.62, z-score = -0.83, R) >droMoj3.scaffold_6680 24109244 78 + 24764193 ----GGUCCCUUUAUUGGCGCCAUCGAUGAGGGCACCACAUCGGCACGGUUUAUGAUCUUUCGGGCAGGCACCGAUGAUAUU ----(((.((((((((((.....)))))))))).))).((((((....((((.(((....)))...)))).))))))..... ( -24.80, z-score = -0.99, R) >droGri2.scaffold_15110 1815190 78 - 24565398 ----GGUCCAUUUGUUGGCGCCAUCGAUGAGGGCACCACAUCGGCUCGUUUCAUGAUAUUUCGUGCGGGUACCGAUGACAUU ----(((((.((..((((.....))))..)))).))).((((((((((...(((((....)))))))))..))))))..... ( -24.90, z-score = -0.78, R) >anoGam1.chr2L 37599302 82 - 48795086 AUUCGGCGACCUCGUCGGCUCGAUCGACGAGGGCACCAGCUCGGCCCGGUUUCUGCUGUUCCGGGCGGAGACGGCCGAGGUG ....((.(.(((((((((.....))))))))).).))..(((((((..(((((((((......))))))))))))))))... ( -44.50, z-score = -2.56, R) >triCas2.chrUn_12 757000 78 + 931581 ----GGCCCUUUGGUGGGCGCGAUAGAUGAGGGAACCUCCAGUGCAAGAUUCAUCCUCUUCAAAGCUGGAACCACCCAAGUG ----.((((......))))...........(((....((((((..((((.......))))....))))))....)))..... ( -22.70, z-score = -0.04, R) >consensus _U__GGUCCAUUUGUUGGCGCCAUUGACGAGGGCACCACCUCGGCGCGAUUUAUAAUAUUCCGUGCGGGCACUGACGAAAUU ...........((((.((.(((......((((......)))).((.((.............)).)).))).)).)))).... (-13.52 = -13.18 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:17 2011