| Sequence ID | dm3.chr3L |
|---|---|
| Location | 198,435 – 198,528 |
| Length | 93 |
| Max. P | 0.921403 |
| Location | 198,435 – 198,528 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 98.39 |
| Shannon entropy | 0.02617 |
| G+C content | 0.63441 |
| Mean single sequence MFE | -41.92 |
| Consensus MFE | -40.04 |
| Energy contribution | -39.85 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 198435 93 + 24543557 ACUGCUGCCGUAGUGGCUCCAUUAGGUGGCCUACCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGC ......((((((((.((((((((((((((((.......).))))))))))))..))).)))))))).(((((.....(((....)))))))). ( -41.40, z-score = -1.17, R) >droSim1.chr3L 164522 93 + 22553184 ACUGCUGCCGUAGUGGCUCCAUUAGGUGGCCUACCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGC ......((((((((.((((((((((((((((.......).))))))))))))..))).)))))))).(((((.....(((....)))))))). ( -41.40, z-score = -1.17, R) >droSec1.super_2 221048 93 + 7591821 ACUGCUGCCGUAGUGGCUCCAUUAGGUGGCCUACCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGC ......((((((((.((((((((((((((((.......).))))))))))))..))).)))))))).(((((.....(((....)))))))). ( -41.40, z-score = -1.17, R) >droEre2.scaffold_4784 187108 93 + 25762168 ACUGCUGCCGUAGUCGCUCCAUUAGGUGGCCUACCCUUACGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGC ......((((((((((((((((((((((((.((....)).))))))))))))..)))))))))))).(((((.....(((....)))))))). ( -43.50, z-score = -2.44, R) >consensus ACUGCUGCCGUAGUGGCUCCAUUAGGUGGCCUACCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGC ......((((((((.(((((((((((((((.((....)).))))))))))))..))).)))))))).(((((.....(((....)))))))). (-40.04 = -39.85 + -0.19)
| Location | 198,435 – 198,528 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 98.39 |
| Shannon entropy | 0.02617 |
| G+C content | 0.63441 |
| Mean single sequence MFE | -36.90 |
| Consensus MFE | -35.84 |
| Energy contribution | -35.90 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 198435 93 - 24543557 GCAACAGCAUCAGCGCAAGGAUGUUGAGCCGCAGCCGCCGCCCACCAAGCGGCGCAAAGGUAGGCCACCUAAUGGAGCCACUACGGCAGCAGU ((..(((((((..(....)))))))).((((..((.(((((.......)))))))...(((.(((..((....)).)))))).)))).))... ( -37.80, z-score = -2.18, R) >droSim1.chr3L 164522 93 - 22553184 GCAACAGCAUCAGCGCAAGGAUGUUGAGCCGCAGCCGCCGCCCACCAAGCGGCGCAAAGGUAGGCCACCUAAUGGAGCCACUACGGCAGCAGU ((..(((((((..(....)))))))).((((..((.(((((.......)))))))...(((.(((..((....)).)))))).)))).))... ( -37.80, z-score = -2.18, R) >droSec1.super_2 221048 93 - 7591821 GCAACAGCAUCAGCGCAAGGAUGUUGAGCCGCAGCCGCCGCCCACCAAGCGGCGCAAAGGUAGGCCACCUAAUGGAGCCACUACGGCAGCAGU ((..(((((((..(....)))))))).((((..((.(((((.......)))))))...(((.(((..((....)).)))))).)))).))... ( -37.80, z-score = -2.18, R) >droEre2.scaffold_4784 187108 93 - 25762168 GCAACAGCAUCAGCGCAAGGAUGUUGAGCCGCAGCCGCCGCCCACCAAGCGGCGUAAGGGUAGGCCACCUAAUGGAGCGACUACGGCAGCAGU ((..(((((((..(....)))))))).(((.....((((((.......)))))).....((((.((.((....)).).).))))))).))... ( -34.20, z-score = -0.71, R) >consensus GCAACAGCAUCAGCGCAAGGAUGUUGAGCCGCAGCCGCCGCCCACCAAGCGGCGCAAAGGUAGGCCACCUAAUGGAGCCACUACGGCAGCAGU ((..(((((((..(....)))))))).((((..((.(((((.......)))))))...(((.(((..((....)).)))))).)))).))... (-35.84 = -35.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:15 2011