| Sequence ID | dm3.chr3L |
|---|---|
| Location | 169,395 – 169,487 |
| Length | 92 |
| Max. P | 0.625735 |
| Location | 169,395 – 169,487 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 84.28 |
| Shannon entropy | 0.27264 |
| G+C content | 0.50082 |
| Mean single sequence MFE | -29.20 |
| Consensus MFE | -25.06 |
| Energy contribution | -26.34 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 169395 92 - 24543557 GAGUAUUAUCUCCCAUGGAUGUGGGCGUCUUUUGAGGUUUCCAAGGGUCGUGGAGCUCUUUGGAUGCUAUUGGUCACAUCGGCCAAUUAGUU---- ((((.((((..(((.((((....(((.((....)).))))))).)))..)))).)))).......((((((((((.....)))))).)))).---- ( -29.00, z-score = -1.35, R) >droSim1.chr3L 138576 92 - 22553184 GAGUAUUAUCGCCCAUGGAUGUGGGCGUCGUUCGAGGUUUCCAAAGGUCAUGAAGCUCUAUGGAUGCUAUUGGUCACGUCGGCCAAUUAUUU---- (((......(((((((....)))))))...)))..(((.((((.((((......)).)).)))).)))(((((((.....))))))).....---- ( -27.30, z-score = -1.00, R) >droSec1.super_2 187250 92 - 7591821 GAGUAUUAUCGCCCAUGGAUGUGGGCGUCGUUCGAGGUUUCCAAAGGUCAUGAAGCUCUAUGGAUGCUAUUGGUCACGUCGGCCAAUUAGUU---- (((......(((((((....)))))))...)))..(((.((((.((((......)).)).)))).)))(((((((.....))))))).....---- ( -27.30, z-score = -0.91, R) >droYak2.chr3L 145258 93 - 24197627 GAGCACCAUCGCCCAUGGAUGUGGGCGUGUGUCGAGGUUUCCAAAGGU---CGCGGUCUUUGGAUGCUAACGGUCAAGUCGGCCAAUUAGUUUGAA ((.(((...(((((((....))))))).)))))..(((.((((((((.---.....)))))))).)))...((((.....))))............ ( -32.60, z-score = -1.42, R) >droEre2.scaffold_4784 153675 96 - 25762168 GAGUACCAUCGCCCAUGAAUGUGGGCGUCUGUCGAGGUUUCCAAAGGUCGGCGAGCUUUUUGGAUGCUAAUGGUCACGUCGGCCAAGUAGUUUUAC (((.(((..(((((((....)))))))((....))))))))....((((((((.(((..((((...)))).)))..))))))))............ ( -29.80, z-score = -0.91, R) >consensus GAGUAUUAUCGCCCAUGGAUGUGGGCGUCUUUCGAGGUUUCCAAAGGUCAUGGAGCUCUUUGGAUGCUAUUGGUCACGUCGGCCAAUUAGUU____ .........(((((((....)))))))........(((.((((((((.(.....).)))))))).)))(((((((.....)))))))......... (-25.06 = -26.34 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:12 2011