| Sequence ID | dm3.chr3L |
|---|---|
| Location | 168,001 – 168,091 |
| Length | 90 |
| Max. P | 0.994338 |
| Location | 168,001 – 168,091 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.47 |
| Shannon entropy | 0.44426 |
| G+C content | 0.38077 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -12.91 |
| Energy contribution | -13.85 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.69 |
| SVM RNA-class probability | 0.994338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 168001 90 - 24543557 ---------CGUUGUUGCUCUU--GUCGGC-ACUCAAUUGACCGUUUU------------UGGGUUAAUUGUUUCCAUUAAAAGGCUC-GGCUACUUUUUAAUUAGCGACAAUUG ---------.(((((((((...--...((.-...(((((((((.....------------..)))))))))...))(((((((((...-.....))))))))).))))))))).. ( -25.80, z-score = -3.42, R) >droGri2.scaffold_15110 20856789 112 + 24565398 UUUAUGUGCUGUUGUCGCCACUCAAUUGGCUACU--AUUAUUUUUUUUUAUGUUAUUUUGUGGGUUAAUUGUUUCCAUUAAAAAGUGC-GGCUACUUUUUAAUUAACGGCAAUUG ......((((((((..((((......))))....--.......................(((((.........)))))(((((((((.-...)))))))))..)))))))).... ( -22.10, z-score = -1.36, R) >droMoj3.scaffold_6654 1173957 96 - 2564135 CACUUUUGUUGUUGUCGACACUCAAUUGGCU------UGGUUUCUUUU------------UGGGUUAAUUGUUUCCAUUAAAAAGUGC-GGCUACUUUUUAAUUAACAGCAAUUG ..(..(((((((((........(((((((((------..(.......)------------..))))))))).....(((((((((((.-...))))))))))))))))))))..) ( -25.00, z-score = -3.34, R) >droVir3.scaffold_13049 22512310 93 + 25233164 ------CAUUGUUGUUGCCGCU--GUCGCC-ACUCAAUUGGCCGUUUU------------UGGGUUAAUUGUUUCCAUUAAAAAGU-GCGGCUACUUUUUAAUUAACGACAAUUG ------.((((((((((.....--......-...(((((((((.....------------..))))))))).....((((((((((-(....))))))))))))))))))))).. ( -24.00, z-score = -1.99, R) >droWil1.scaffold_180727 2353056 94 - 2741493 ---------UGUUGUUGCUUGUUGGUCGCCAACUCAAUUGGCCGUUUU------------UGGGUUAAUUGUUUCCAUUAAAAAGUGGCGGCUACUUUUUAAUUAACAACAAUUG ---------((((((((.(((.(((((((((...(((((((((.....------------..)))))))))..............))))))))).....))).)))))))).... ( -28.53, z-score = -3.33, R) >droAna3.scaffold_13337 23164361 79 + 23293914 ------------------CAUU--GCCGGC-AGUCG---GGCCGAUUU------------UGGGUUAAUUGUUUCCAUUAAAAAGUUUCAGCUACUUUUUAAUUAGCGGUAAUUG ------------------.(((--((((((-(((..---(.(((....------------))).)..)))))....((((((((((.......))))))))))...))))))).. ( -21.50, z-score = -2.49, R) >droEre2.scaffold_4784 151367 90 - 25762168 ---------CGUUGUUGCUCUU--GUCGGC-ACUCAAUUGGCCGUUUU------------UGGGUUAAUUGUUUCCAUUAAAAGGCUC-GGCUACUUUUUAAUUAGCGACAAUUG ---------.(((((((((...--...((.-...(((((((((.....------------..)))))))))...))(((((((((...-.....))))))))).))))))))).. ( -25.30, z-score = -2.91, R) >droYak2.chr3L 143701 90 - 24197627 ---------CGUUGUUGCUCUU--GUCGGC-ACUCAAUUGGCCGUUUU------------UGGGUUAAUUGUUUCCAUUAAAAGGCUU-GGCUACUUUUUAAUUAGCGACAAUUG ---------.(((((((((...--...((.-...(((((((((.....------------..)))))))))...))(((((((((...-.....))))))))).))))))))).. ( -25.30, z-score = -2.91, R) >droSec1.super_2 185954 90 - 7591821 ---------CGUUGUUGCUCUU--GUCGGC-ACUCAAUUGACCAUUUU------------UGGGUUAAUUGUUUCCAUUAAAAGGCUC-GGCUACUUUUUAAUUAGCGACAAUUG ---------.(((((((((...--...((.-...(((((((((.....------------..)))))))))...))(((((((((...-.....))))))))).))))))))).. ( -25.60, z-score = -3.66, R) >droSim1.chr3L 137192 90 - 22553184 ---------CGUUGUUGCUCUU--GUCGGC-ACUCAAUUGACCAUUUU------------UGGGUUAAUUGUUUCCAUUAAAAGGCUC-GGCUACUUUUUAAUUAGCGACAAUUG ---------.(((((((((...--...((.-...(((((((((.....------------..)))))))))...))(((((((((...-.....))))))))).))))))))).. ( -25.60, z-score = -3.66, R) >consensus _________CGUUGUUGCUCUU__GUCGGC_ACUCAAUUGGCCGUUUU____________UGGGUUAAUUGUUUCCAUUAAAAAGCUC_GGCUACUUUUUAAUUAGCGACAAUUG ..........(((((((..........((.....(((((((((...................)))))))))...))(((((((((.........)))))))))...))))))).. (-12.91 = -13.85 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:11 2011