| Sequence ID | dm3.chr3L |
|---|---|
| Location | 152,699 – 152,752 |
| Length | 53 |
| Max. P | 0.887997 |
| Location | 152,699 – 152,752 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 96.23 |
| Shannon entropy | 0.05198 |
| G+C content | 0.45283 |
| Mean single sequence MFE | -12.17 |
| Consensus MFE | -11.99 |
| Energy contribution | -11.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 152699 53 - 24543557 GUAAAAAACGCUCACGGAAACGGAGAGUAAGAGAGUGCUCCUGUUAAGUAGCA .........(((.((...(((((.(((((......))))))))))..))))). ( -14.30, z-score = -2.17, R) >droSec1.super_2 172354 53 - 7591821 GUAAAGAACGCUCACGGAAACGGAGAGUAAGAGAGUGCUCCUGAUAAGUAGUA .......((.(((.((....))))).)).......((((.((....)).)))) ( -11.10, z-score = -1.09, R) >droSim1.chr3L 122506 53 - 22553184 GUAAAGAACGCUCACGGAAACGGAGAGUAAGAGAGUGCUCCUGAUAAGUAGUA .......((.(((.((....))))).)).......((((.((....)).)))) ( -11.10, z-score = -1.09, R) >consensus GUAAAGAACGCUCACGGAAACGGAGAGUAAGAGAGUGCUCCUGAUAAGUAGUA .......((.(((.((....))))).)).......((((.((....)).)))) (-11.99 = -11.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:08 2011