Locus 5635

Sequence ID dm3.chr3L
Location 137,581 – 137,660
Length 79
Max. P 0.652680
window7736

overview

Window 6

Location 137,581 – 137,660
Length 79
Sequences 4
Columns 89
Reading direction forward
Mean pairwise identity 83.58
Shannon entropy 0.26807
G+C content 0.44833
Mean single sequence MFE -24.91
Consensus MFE -17.09
Energy contribution -17.02
Covariance contribution -0.06
Combinations/Pair 1.14
Mean z-score -1.85
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.34
SVM RNA-class probability 0.652680
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 137581 79 + 24543557
ACUUUUGACAUUGAAUCCGAUGCAGCUGGUGCACUAAAUA----------UUGGCAAACUAUGGUUGUGCAAUCGGGAGCAGAGUCGAC
....(((((.(((..(((((((((((..(((.......))----------)..)).(((....))).))).))))))..))).))))). ( -24.00, z-score =  -2.09, R)
>droEre2.scaffold_4784 116583 85 + 25762168
ACUUUUGGCAUUGAAUCCGAUGCAGCUGGUGCAUUCAAUACAAGCAAACAUUACCAAACUAUU----UGCAAUCGGGAGCAGAGUCGGC
....(((((.(((..((((((((((.((((...........................)))).)----))).))))))..))).))))). ( -19.53, z-score =  -0.38, R)
>droYak2.chr3L 107459 84 + 24197627
ACUUUUGACAUUGAAUCCGAUGCAGCUGGUGCAUUGAGUACAAGCUAAUAUUGCCAA-CUAUU----UGCAAUCGGGAGCAGUGUCGGC
....(((((((((..((((((((((.(((((((...(((....))).....)))..)-))).)----))).))))))..))))))))). ( -29.70, z-score =  -3.05, R)
>droSim1.chr3L 106708 89 + 22553184
ACUUUUGACAUUGAAUCCGAUGCAGCUGGUGCAUUAAAUACGAGCAAAUAUUGGCAAACUAUGUUUGUGCAAUCGGGAGCAGAGUCGGC
....(((((.(((..((((((((.(((.(((.......))).)))........((((((...)))))))).))))))..))).))))). ( -26.40, z-score =  -1.89, R)
>consensus
ACUUUUGACAUUGAAUCCGAUGCAGCUGGUGCAUUAAAUACAAGCAAAUAUUGCCAAACUAUG____UGCAAUCGGGAGCAGAGUCGGC
....(((((.(((..(((((((((((....))...................(((....)))......))).))))))..))).))))). (-17.09 = -17.02 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:08 2011