| Sequence ID | dm3.chr3L |
|---|---|
| Location | 123,448 – 123,549 |
| Length | 101 |
| Max. P | 0.783091 |
| Location | 123,448 – 123,549 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.03 |
| Shannon entropy | 0.49291 |
| G+C content | 0.40521 |
| Mean single sequence MFE | -22.42 |
| Consensus MFE | -14.20 |
| Energy contribution | -15.45 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 123448 101 - 24543557 AUAGGUUGAGGUAUCCGUGGAAG-----GUACGAUUGAGUGGCCAAAUGGAUAGUCACAGUAUCCGUCAAUCGUA-----AAUCUUAAAAACAAGUUCAAAAGAAUUUUUU--------- ...(.(((((((..((......)-----)(((((((((.(((.....((........))....))))))))))))-----.)))))))...)((((((....))))))...--------- ( -21.60, z-score = -1.46, R) >droSim1.chr3L 92504 82 - 22553184 AUAGGUUGAGGUAUCCGUGGAAG-----GUACGAUUGAGUGAGCAAACGAGUGG--ACGGUACCCGUCAAUCGUA-----AAUCUUAAAAACAA-------------------------- ...(.(((((((..((......)-----)(((((((..((......)).....(--((((...))))))))))))-----.)))))))...)..-------------------------- ( -18.70, z-score = -0.54, R) >droSec1.super_2 143199 84 - 7591821 AUAGGUUGAGGUGUCUGUGGAAG-----GUACGAUUGAGUGACCAAACGAGUGGUCACGGUACCCGUCAAUCGUA-----AAUCUUAAAAACAA-------------------------- ...(.(((((((.(((.....))-----)((((((((((((((((......)))))))((...)).)))))))))-----.)))))))...)..-------------------------- ( -26.40, z-score = -2.56, R) >droEre2.scaffold_4784 100111 120 - 25762168 AUGGGUUGAGGUGUCUGUGGAAGAAUGAGUACGAUUGAGUGGGCAAGAGGGUCGUCACAGUAUCCAUUUAUCGUAGACACAAUUUUAAGUAUAAUAAAAACCAGUUAAAAAGAUGUUCUU .(((......((((((((((..(((((..(((...(((.(((.(.....).))))))..)))..))))).))))))))))..(((((.......))))).)))................. ( -23.00, z-score = 0.06, R) >consensus AUAGGUUGAGGUAUCCGUGGAAG_____GUACGAUUGAGUGACCAAACGAGUGGUCACAGUACCCGUCAAUCGUA_____AAUCUUAAAAACAA__________________________ .....(((((((.((....))........((((((((((((((((......))))))).(....).)))))))))......)))))))................................ (-14.20 = -15.45 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:07 2011