| Sequence ID | dm3.chr3L |
|---|---|
| Location | 118,882 – 118,947 |
| Length | 65 |
| Max. P | 0.976912 |
| Location | 118,882 – 118,947 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 56.92 |
| Shannon entropy | 0.61890 |
| G+C content | 0.44755 |
| Mean single sequence MFE | -15.87 |
| Consensus MFE | -11.29 |
| Energy contribution | -10.97 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 118882 65 + 24543557 UCUCUGAGUCCCUUACCUUUGGUAGGGGGAAACUGCAGAGUCGAUUAAAGGCUCGAUUGACCAAA ..(((((((((((((((...))))))))...))).))))(((((((........))))))).... ( -22.00, z-score = -1.90, R) >droSec1.super_43 270810 65 - 327307 UCUCUGAGUUUUUUACUACUGGUGCGAAAAAACUGCAGAGAAUUUCGAAAAACAAAACAACCAAA ((((((((((((((..((....))..)))))))).))))))........................ ( -13.30, z-score = -2.39, R) >droAna3.scaffold_13339 3368697 55 - 4599533 AACCUGAGACUCUUACCACAGG--GGGGAAAACGUCAGGGU--------GUCUCGAUGGACCAAA ..((((((..(((..((...))--..)))...).)))))(.--------((((....)))))... ( -12.30, z-score = 1.19, R) >consensus UCUCUGAGUCUCUUACCACUGGU_GGGGAAAACUGCAGAGU___U__AAGACUCGAUCGACCAAA .(((((..(((((((((...)))))))))......)))))......................... (-11.29 = -10.97 + -0.32)
| Location | 118,882 – 118,947 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 56.92 |
| Shannon entropy | 0.61890 |
| G+C content | 0.44755 |
| Mean single sequence MFE | -15.50 |
| Consensus MFE | -6.69 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 118882 65 - 24543557 UUUGGUCAAUCGAGCCUUUAAUCGACUCUGCAGUUUCCCCCUACCAAAGGUAAGGGACUCAGAGA .........((((........))))(((((.(((...(((.((((...)))).))))))))))). ( -19.10, z-score = -1.73, R) >droSec1.super_43 270810 65 + 327307 UUUGGUUGUUUUGUUUUUCGAAAUUCUCUGCAGUUUUUUCGCACCAGUAGUAAAAAACUCAGAGA .......((((((.....))))))((((((.((((((((.((.......)))))))))))))))) ( -15.10, z-score = -2.19, R) >droAna3.scaffold_13339 3368697 55 + 4599533 UUUGGUCCAUCGAGAC--------ACCCUGACGUUUUCCCC--CCUGUGGUAAGAGUCUCAGGUU ....(((......)))--------..(((((..((((..((--.....))..))))..))))).. ( -12.30, z-score = 0.07, R) >consensus UUUGGUCAAUCGAGACUU__A___ACUCUGCAGUUUUCCCC_ACCAGUGGUAAGAGACUCAGAGA .........................(((((.((((((..((.......))...))))))))))). ( -6.69 = -6.70 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:06 2011