| Sequence ID | dm3.chr3L |
|---|---|
| Location | 117,346 – 117,404 |
| Length | 58 |
| Max. P | 0.706354 |
| Location | 117,346 – 117,404 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 62.64 |
| Shannon entropy | 0.62572 |
| G+C content | 0.36638 |
| Mean single sequence MFE | -11.79 |
| Consensus MFE | -6.74 |
| Energy contribution | -5.80 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.706354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 117346 58 + 24543557 UUAAAAAGAUCCCAUUCUUUGGAAUCACCAAAGAAAGUGGGAAUCUGUAUUUUAGGCA ((((((((((((((((((((((.....)))))))..))))).))))...))))))... ( -18.40, z-score = -3.50, R) >droSim1.chr2h_random 793290 58 + 3178526 GAGAAAAAGUCCAACUCUUUUUCUUCUUCAGUAAAGGUGGGAACUUGUAUUUUUGGUA (((((((((.......)))))))))....(.((((((((.(....).)))))))).). ( -9.00, z-score = 0.55, R) >droSec1.super_80 44630 58 + 135508 AAGAAUAAGUCCCACUAUUUGACUUCUCCAGUAAAGGUAGGAACUUGUAUUUUUGGUU ....((((((((.(((.....(((.....)))...))).)).)))))).......... ( -8.40, z-score = 0.66, R) >triCas2.singleUn_1817 15298 58 - 22356 CUGAAUGCUAACCAUUUUUCGUAUGCACCGUCGAAAGUGGGCAAGUCAAUUUUGGGUA ...........(((.........(((.(((.(....))))))).........)))... ( -11.37, z-score = -0.05, R) >consensus AAGAAAAAGUCCCACUCUUUGUAUUCACCAGUAAAAGUGGGAACUUGUAUUUUUGGUA ......((((((((((.((((..........)))))))))).))))............ ( -6.74 = -5.80 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:04 2011