| Sequence ID | dm3.chr3L |
|---|---|
| Location | 108,666 – 108,761 |
| Length | 95 |
| Max. P | 0.551964 |
| Location | 108,666 – 108,761 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 54.77 |
| Shannon entropy | 0.73294 |
| G+C content | 0.37442 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -4.29 |
| Energy contribution | -3.98 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 108666 95 + 24543557 UUUGUCGGCAGUGUAGUCACCUACGGUGACUG---CAGAGCAAAAUUGAUAAAUUAAUAAUUAAUGAAAUAAUGAAUAGCAAAGGGGACUUUAAUUAG (((((((((..((((((((((...))))))))---))..)).....)))))))...........................((((....))))...... ( -24.10, z-score = -3.40, R) >droEre2.scaffold_4784 92338 75 + 25762168 UUAGUCAGCAGUGUAGUCAGUUACGGUGACUG---CACAGAAAACUUAAAAAGUUAUUUAUGACC-------CCAAUAGCAUAGG------------- ...((((...(((((((((.......))))))---)))(((.((((.....)))).))).)))).-------.............------------- ( -17.10, z-score = -1.96, R) >droYak2.chr3L 85879 88 + 24197627 UUUUUCAGCAGAGUAGUCAGCUACGGUGACUG---CACAGAAAAAUUGAAAAACUAUUAAUGAUC-------CCAAAAGCAUAGGGGACUUUAAUAAG ((((((((....(((((((.(....)))))))---).........)))))))).((((((.(.((-------((..........))))).)))))).. ( -19.22, z-score = -2.00, R) >droPer1.super_970 2458 95 - 7728 AUUAUUUACGGUCCAUGGCUUUCAGACCAGUGUGCCAGAUAAAGGUUAAUAGUGGAAUUGGUAAGAAU---GGAAAGAGGAGAGGAGAGCAAAAGUAG ........(..(((((..(((((((.(((.((((((.......)))..))).)))..)))).))).))---)))..)..................... ( -16.80, z-score = -0.35, R) >consensus UUUGUCAGCAGUGUAGUCAGCUACGGUGACUG___CACAGAAAAAUUAAAAAAUUAAUAAUGAAC_______CCAAUAGCAUAGGGGACUUUAAUUAG .............((((((((...)))))))).................................................................. ( -4.29 = -3.98 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:52:04 2011