Locus 5627

Sequence ID	dm3.chr3LHet
Location	2,491,205 – 2,491,270
Length	65
Max. P	0.938275

overview

Window 5

Location	2,491,205 – 2,491,270
Length	65
Sequences	5
Columns	68
Reading direction	reverse
Mean pairwise identity	70.96
Shannon entropy	0.50491
G+C content	0.45540
Mean single sequence MFE	-16.03
Consensus MFE	-11.54
Energy contribution	-11.82
Covariance contribution	0.28
Combinations/Pair	1.24
Mean z-score	-1.22
Structure conservation index	0.72
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.42
SVM RNA-class probability	0.938275
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 2491205 65 - 2555491
--CUACUUAGUUGCAA-UGCCGAAACCGCGAUUGGACAUGAUAAUGUCGAUUGCGACAGAUCUCGCAA
--.......(((((((-(((.......)).....(((((....))))).))))))))........... ( -15.70, z-score =  -1.14, R)
>droSec1.super_235 11272 59 - 24486
-----CUAUGUUGCAAAUGCAGACACAGCACUUUGACAGG---AUGU-GAUUGCGACAAUUCUCGGUU
-----...((((((((.((((..(..............).---.)))-).)))))))).......... ( -12.34, z-score =  -0.06, R)
>droSim1.chrU 5567486 61 - 15797150
CUACACUUUGUUGCAA-UGCCGACUCCGCAA-UGGACAGG---AUGUCAAUUGCGACAGUUCGGAU--
.......(((((((((-(...((((((....-......))---).))).)))))))))).......-- ( -17.40, z-score =  -1.53, R)
>droYak2.chrX 20704572 63 - 21770863
--CUACUAUGUUGCAAGUGCAGACACAGCACUUUGACAGG---AUGUCGAUUGCGACAGUUCUUGCAG
--......((((((((((((.......)))).(((((...---..))))))))))))).......... ( -18.50, z-score =  -1.17, R)
>droVir3.scaffold_12723 361266 59 - 5802038
-----CUUUGUUGCAA-UGCUGAUCCAGCACUUUAAAAGG---AUGUUGGUUGCAACAAUUCUCGUAG
-----..(((((((((-.......(((((((((....)))---.)))))))))))))))......... ( -16.21, z-score =  -2.17, R)
>consensus
____ACUUUGUUGCAA_UGCAGACACAGCACUUUGACAGG___AUGUCGAUUGCGACAGUUCUCGCAG
........((((((((.(((.......)))..((((((......)))))))))))))).......... (-11.54 = -11.82 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:59 2011