| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,488,992 – 2,489,106 |
| Length | 114 |
| Max. P | 0.500000 |
| Location | 2,488,992 – 2,489,106 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.14 |
| Shannon entropy | 0.45619 |
| G+C content | 0.46491 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -16.48 |
| Energy contribution | -15.47 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2488992 114 + 2555491 UGUUAGGGAUCGUA----UGUAGAGUCAUGGCGACAUCGAUAGUUAUCGAUGUUAAUGUGUUUCGAGCUGUGUGGCACGGGGAAAAUUCUUCCCUAAGAA--AAGCCCAAGCUAGCGUCA .......((.(((.----....(((.((((..(((((((((....)))))))))..)))).))).((((.((.(((..((((((.....)))))).....--..))))))))).))))). ( -33.60, z-score = -1.58, R) >droSim1.chr3R 27050532 104 - 27517382 CGUUAGAGAU-----------AAAGUCGUGA-GACGUCGAUAGUUACCGAUGUU--UAUGUCGCGAGCUGUGUGGCACAGGGAAAACUCUCCCCUGAGAA--AAGCAUGAGAUAGCGGCA ........((-----------((((((....-)))((((........)))).))--)))(((((...((((((..(.(((((.........))))).)..--..)))).))...))))). ( -30.40, z-score = -1.41, R) >droSec1.super_61 64019 113 + 189864 UGUUAGAGAUCGUA----CGUAGAGUCCUGA-GACGUCGAUAGUUAUCGAUGUU--UAUGUUGCGAGCUUUGUGGUACGAGGAAAACUCUGCCCUCAGGCUUACGCCUGAGCUAGCGCCG .(((((........----.((((((((((.(-(((((((((....)))))))))--)......((.(((....))).))))))...)))))).(((((((....)))))))))))).... ( -41.20, z-score = -2.81, R) >droYak2.chrU 14806244 115 + 28119190 UAUUAGAAACCGUAGUUGUGUAGAGUUGUAA-GACGUCGAUAGUUAUUGAUAUU--UAAAUUGCGUGUUGUGUGGCAAAGGGAAAACUCCGCAUUGGGAA--GACCCUGAGCUGGCAUAA .......((((((((((.......(((....-)))((((((....))))))...--..))))))).)))(((((((..((((.....(((......))).--..))))..))).)))).. ( -24.80, z-score = -0.01, R) >consensus UGUUAGAGAUCGUA____UGUAGAGUCGUGA_GACGUCGAUAGUUAUCGAUGUU__UAUGUUGCGAGCUGUGUGGCACAGGGAAAACUCUGCCCUGAGAA__AAGCCUGAGCUAGCGUCA ((((((....................((((.((((((((((....)))))))))).))))......(((....)))...(((.....((((....))))......)))...))))))... (-16.48 = -15.47 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:58 2011