| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,462,091 – 2,462,181 |
| Length | 90 |
| Max. P | 0.619404 |
| Location | 2,462,091 – 2,462,181 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 46.84 |
| Shannon entropy | 0.88529 |
| G+C content | 0.52432 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -6.98 |
| Energy contribution | -7.14 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.619404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2462091 90 - 2555491 UCCCUCACAACGUCACCCCAUAGUGGCGCUCCUAUUAGGACGCUCGUUCCACCCGGUGCGAAUAUAAGGC-UGUUCCAGGACGAGCUUGUA ......((((((((((......)))))).(((.....))).((((((((....((((.(........)))-)).....)))))))))))). ( -24.10, z-score = -0.30, R) >droSim1.chr3h_random 736228 71 + 1452968 -------------------AAAGUCAGCGUCCUAUUAGGAUGCUCGUUCCACCUGGUGCGAGUCCAAUACGAGCUCCAGUACGAGCAUAA- -------------------......(((((((.....))))))).((((...((((.((..((.....))..)).))))...))))....- ( -24.00, z-score = -3.22, R) >droSec1.super_5 33549 71 - 5866729 -------------------AAAGUCAGCGUCCUAUUAGGAUGCUCGUUCCACCUGGUGCGAGUCCAAUACGAGCUCCAGUACGAGCAUAA- -------------------......(((((((.....))))))).((((...((((.((..((.....))..)).))))...))))....- ( -24.00, z-score = -3.22, R) >droAna3.scaffold_12943 977394 77 - 5039921 ------------ACGGCGAAGACGAGAACCCCCACAAGACGGUUACUCCCACCUGGAACUAAUUUAGAAG-UUUUUCGAAAAGAUCUGGA- ------------....((((((((((((((..........)))).)))....(((((.....)))))..)-.))))))............- ( -10.60, z-score = 1.71, R) >droGri2.scaffold_14908 12397 77 + 16997 ------------GCUGCAGCUCUGAAUGCUCCCAAGACACGUCUUCUGCCGCGCAAGGCAAACAUCACCC-GAUUCCGGCAGAGGUUGGA- ------------...(((........)))..((((.......((((((((((....)......(((....-)))..))))))))))))).- ( -19.71, z-score = 0.85, R) >consensus _____________C__C__AAAGUAAGCCUCCUAUUAGGAGGCUCGUUCCACCUGGUGCGAAUAUAAUAC_AGUUCCAGUACGAGCUUGA_ .......................................((((((((.....((((.((.............)).)))).))))))))... ( -6.98 = -7.14 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:57 2011