| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,383,764 – 2,383,819 |
| Length | 55 |
| Max. P | 0.924811 |
| Location | 2,383,764 – 2,383,819 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 93.94 |
| Shannon entropy | 0.08348 |
| G+C content | 0.32727 |
| Mean single sequence MFE | -7.70 |
| Consensus MFE | -7.77 |
| Energy contribution | -7.33 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.38 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2383764 55 - 2555491 GGGUUAGCAGUCGGCAAGAAACAAAAUAGAAAUGAAUUUGUUUCAAAUAUCAUCG ......((.....))..((((((((.((....))..))))))))........... ( -7.90, z-score = -1.47, R) >droSec1.super_66 36423 55 + 176163 GGGUUAGCAGUCAGCAAGAAAUAAAAUAGAAUUGAAUUUGUUUCAAAUACCAUCG .(((..((.....))..((((((((...........))))))))....))).... ( -7.60, z-score = -1.24, R) >droSim1.chr3h_random 1414193 55 + 1452968 GGGUUAGCAGUCAGCAAGAAAUAAAAUAGAAUUGAAUUUGUUUCAAAUACCAUAG .(((..((.....))..((((((((...........))))))))....))).... ( -7.60, z-score = -1.42, R) >consensus GGGUUAGCAGUCAGCAAGAAAUAAAAUAGAAUUGAAUUUGUUUCAAAUACCAUCG .(((..((.....))..((((((((...........))))))))....))).... ( -7.77 = -7.33 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:54 2011