Locus 5621

Sequence ID dm3.chr3LHet
Location 2,378,635 – 2,378,745
Length 110
Max. P 0.959458
window7718

overview

Window 8

Location 2,378,635 – 2,378,745
Length 110
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 74.00
Shannon entropy 0.37663
G+C content 0.45056
Mean single sequence MFE -36.13
Consensus MFE -22.04
Energy contribution -21.93
Covariance contribution -0.10
Combinations/Pair 1.21
Mean z-score -2.32
Structure conservation index 0.61
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.67
SVM RNA-class probability 0.959458
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 2378635 110 - 2555491
-------UUGCUGGUGUCAGCACUUUGCUGGAUGAGCGGUCGGCUUGCCGGUCGCGGUUAGCUCUAGUACAGUUGGAUAAGUUUUUCAGUUUUGCUAUGAUCGCUGAUUCAAUAAAG
-------.(((((....)))))(((((.(((((.(((((((((((.((((....)))).)))).(((((.(..((((.......))))..).))))).))))))).))))).))))) ( -41.30, z-score =  -3.32, R)
>droEre2.scaffold_4845 1110261 112 - 22589142
GCUGUUUUUGGUAGAGUCAGCA-UUUGCUGGACGAGCGGUCGGCUUGCCGGCCGCGAUUAGCUAUAGUACAGUU-GAUAAGUUUUUCAGUUUAGUUUUGAUCAC---CUUAAUAAAG
..((((...(((.((.((((.(-((.((((((...((((((((....)))))))).(((((((.......))))-)))......))))))..))).))))))))---)..))))... ( -34.50, z-score =  -2.20, R)
>droAna3.scaffold_13261 33980 111 + 284793
-GCUGUUUUGCUAG-GUCAGCACUUCGCUAGACGAGCGGUCGGUUUGCCGGCCGCGCUAAGUUAAAGUACAGUUA---AGAGUUUUCAGUUUUGAUUUGA-CAUUCUACUAAUAAAG
-(((((...(((((-((((((.....))).)))..((((((((....)))))))).)).)))......)))))..---(((((..((((.......))))-.))))).......... ( -32.60, z-score =  -1.43, R)
>consensus
_____UUUUGCUAG_GUCAGCACUUUGCUGGACGAGCGGUCGGCUUGCCGGCCGCGAUUAGCUAUAGUACAGUU_GAUAAGUUUUUCAGUUUUGAUUUGAUCACU__AUUAAUAAAG
.........(((((.((((((.....))).)))..((((((((....))))))))..)))))....................................................... (-22.04 = -21.93 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:53 2011