| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,321,467 – 2,321,544 |
| Length | 77 |
| Max. P | 0.999005 |
| Location | 2,321,467 – 2,321,544 |
|---|---|
| Length | 77 |
| Sequences | 3 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 67.38 |
| Shannon entropy | 0.45802 |
| G+C content | 0.31694 |
| Mean single sequence MFE | -16.13 |
| Consensus MFE | -8.71 |
| Energy contribution | -8.93 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -3.40 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.59 |
| SVM RNA-class probability | 0.999005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2321467 77 + 2555491 GAUUCUUGGGUGAUCCAAUAAUCGCGCAAGACUUAUACUGUCUUAAGUU-UACUUAUUAAUUGUUUUAACUUAUACAC ...(((((.(((((......))))).))))).......(((..((((((-.((.........))...)))))).))). ( -15.70, z-score = -2.82, R) >droAna3.scaffold_13079 679212 78 - 742402 AACAUUAGGGUGAUUCAAUAAUCGCCCAAGAUUUUUAUCGACUUAUAUUCUACUCAUUAAUAGUGUUAACUUAUACUC (((((((((((((((....))))))))..(((....))).....................)))))))........... ( -16.50, z-score = -3.49, R) >droSim1.chr3h_random 82320 61 + 1452968 GAUUCUAGGGUGAUCCAAUAAUCACCCGAGAAUUUUACAGACUUAAGUU-UACUCAUUAACU---------------- ((((((.(((((((......))))))).))))))....((((....)))-)...........---------------- ( -16.20, z-score = -3.88, R) >consensus GAUUCUAGGGUGAUCCAAUAAUCGCCCAAGAAUUUUACAGACUUAAGUU_UACUCAUUAAUUGU_UUAACUUAUAC_C ...(((.(((((((......))))))).)))............................................... ( -8.71 = -8.93 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:52 2011