| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,000,128 – 4,000,248 |
| Length | 120 |
| Max. P | 0.577408 |
| Location | 4,000,128 – 4,000,248 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.88 |
| Shannon entropy | 0.35426 |
| G+C content | 0.43836 |
| Mean single sequence MFE | -29.88 |
| Consensus MFE | -16.36 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4000128 120 + 23011544 GAGUGCGUCCUGACGGAUGCGCCCAAUCAAUGUGGGGCAUUCUGUAUGUCCGCUCAAAGGCCACUCUUCGAACACAAUCGCAUUAUUCAGAAUCAAAUAUAUGAAAUUAGUUCACUACAA (.((((((((....)))))))).).......(((((((((.....))))))(((....)))))).....((((..(((..(((((((........)))).)))..))).))))....... ( -28.50, z-score = -0.72, R) >droSim1.chr2L 3960665 116 + 22036055 GAGUGCGUCCUGACGGAUGCGCCCAAUCAAUGUGGGGCAUUCUGUAUGUCCGCUCAAAGGCCACUCUUUGAACACAAUCGCAUUAUUCAGAAUCAGAUAAAUCAAAUUACUACACU---- (.((((((((....)))))))).)....((((((((((((.....))))))(.(((((((....))))))).).....))))))................................---- ( -31.10, z-score = -1.93, R) >droSec1.super_5 2102956 116 + 5866729 GAGUGCGUCCUGACGGAUGCGCCUAAUCAAUGUGGGGCAUUCUGUAUGUCCGCUCAAAGGCCACUCUUUGAACACAAUCGCAUUAUUCAGAAUCAGAUAAAUCAAAUUACUACACU---- ((((((((((....))))))))......((((((((((((.....))))))(.(((((((....))))))).).....))))))........))......................---- ( -30.80, z-score = -1.99, R) >droYak2.chr2L 4016566 120 + 22324452 GGCUACGUCCUGAAAGAUGCCCCCAAUCAAUGUGGGGCAUUUUGUUUGGCCGCUCAACGGCCACUCUUCGUUCACAAUCGCAAUAUUCAGGAUCAGUUAAACAAGACUACUAUACUUCAA ((((..(((((((((((((((((((.....)).))))))))))(..((((((.....))))))..)....................))))))).))))...................... ( -37.70, z-score = -3.86, R) >droEre2.scaffold_4929 4058969 104 + 26641161 GAUUGCGUCCUAAACGAUGCCCCCAAUAAAUGUGGGGCGUUUUGACU----------UGGCCUCUCUUCGUUCACAAUCGCAAUAUUCAGGAACAAUUAAAUAAUAUUACUACA------ .((((((.....(((((.(((((((.....)).)))))(((......----------.)))......)))))......))))))..............................------ ( -21.30, z-score = -0.90, R) >consensus GAGUGCGUCCUGACGGAUGCGCCCAAUCAAUGUGGGGCAUUCUGUAUGUCCGCUCAAAGGCCACUCUUCGAACACAAUCGCAUUAUUCAGAAUCAGAUAAAUAAAAUUACUACACU____ .((((((.......((((((.((((.......)))))))))).........((......)).................)))))).................................... (-16.36 = -16.40 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:07 2011