| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 2,311,446 – 2,311,543 |
| Length | 97 |
| Max. P | 0.944785 |
| Location | 2,311,446 – 2,311,543 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 63.09 |
| Shannon entropy | 0.57775 |
| G+C content | 0.48030 |
| Mean single sequence MFE | -32.48 |
| Consensus MFE | -14.38 |
| Energy contribution | -14.50 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 2311446 97 - 2555491 -------------------UUGCUGGUGUCAGCACUUUGC-UGGAUGAGCGGUCGGCUUGCCGGUCGCGGUUAGCUCUAGUACAGUUGGAUAAGUUUUUCAGUUUUG--CUAUGAUCGC -------------------..(((.((.(((((.....))-))))).)))(..(((....)))..)(((((((....(((((.(..((((.......))))..).))--)))))))))) ( -32.50, z-score = -1.31, R) >droYak2.chr3L 23546977 110 - 24197627 ----AUGUAUAUGCUGUUUAUGCUAGUGUCAGCACUGUGC-UGGACGAGCGGUCGGCUUGCCGGCCGUGGUUAUCUCUAGUACAGUUGGAUAAGUUUUU-AGUUUUC--AUAU-ACCAC ----..(((((((....(((.(((..((((...(((((((-((((.((((((((((....)))))))).....)))))))))))))..)))))))...)-))....)--))))-))... ( -40.60, z-score = -3.42, R) >droEre2.scaffold_4845 1110271 114 - 22589142 AUGGUGGGAUAUGCUGUUUUUGGUAGAGUCAGCAUU-UGC-UGGACGAGCGGUCGGCUUGCCGGCCGCGAUUAGCUAUAGUACAGUU-GAUAAGUUUUUCAGUUUAG--UUUUGAUCAC .((((.(((.((((((((((....)))).)))))).-.((-(((((..((((((((....)))))))).(((((((.......))))-)))..........))))))--)))).)))). ( -38.00, z-score = -2.72, R) >droAna3.scaffold_13280 1101967 93 - 1428709 ----------------AUCUUGCGAUCGUCAGCAUUUCCCACUGUCACGCGGUCGGCCUGCCGACUAGGC---ACCCUACUGC-------UAAGUUCCUCAGUUCUGUUUUAUAAUCAU ----------------....(((........)))......((((....((((((((....)))))).(((---(......)))-------)..))....))))................ ( -18.80, z-score = -0.18, R) >consensus ________________UUUUUGCUAGUGUCAGCACUUUGC_UGGACGAGCGGUCGGCUUGCCGGCCGCGGUUAGCUCUAGUACAGUU_GAUAAGUUUUUCAGUUUUG__UUAUGAUCAC ...........................(((.((.....))...)))..((((((((....))))))))................................................... (-14.38 = -14.50 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:51:51 2011